Zengye decoction induces alterations to metabolically active gut microbiota in aged constipated rats/Experiment 5
From BugSigDB
Reviewed Marked as Reviewed by Svetlana up on 2025-4-1
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Rattus norvegicus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Traditional Chinese medicine type TCM type,Traditional Chinese medicine type,traditional Chinese medicine type
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Recovery group
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- ZYD (Zengye decoction) group
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Aged constipated rats treated with Zengye decoction (ZYD)
- Group 0 sample size Number of subjects in the control (unexposed) group
- 10
- Group 1 sample size Number of subjects in the case (exposed) group
- 10
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
Signature 1
Reviewed Marked as Reviewed by Svetlana up on 2025-4-1
Source: Figure 5
Description: Comparison of relative abundance at the phylum, family and genus levels among the three groups
Abundance in Group 1: increased abundance in ZYD (Zengye decoction) group
| NCBI | Quality Control | Links |
|---|---|---|
| Mycoplasmatota | ||
| Oxalobacteraceae | ||
| Veillonellaceae | ||
| Clostridiaceae | ||
| Aeromonadaceae | ||
| Oxalobacter | ||
| Oligella | ||
| Phascolarctobacterium | ||
| Clostridium |
Revision editor(s): Tosin
Signature 2
Reviewed Marked as Reviewed by Svetlana up on 2025-4-1
Source: Figure 5
Description: Comparison of relative abundance at the phylum, family and genus levels among the three groups
Abundance in Group 1: decreased abundance in ZYD (Zengye decoction) group
| NCBI | Quality Control | Links |
|---|---|---|
| Helicobacteraceae | ||
| Lactobacillaceae | ||
| Lactobacillus | ||
| Parabacteroides | ||
| Porphyromonadaceae | ||
| Rikenellaceae | ||
| bacterium AF12 | ||
| Deferribacterota |
Revision editor(s): Tosin
