Delivery Mode and the Transition of Pioneering Gut-Microbiota Structure, Composition and Predicted Metabolic Function/Experiment 2

From BugSigDB

Needs review

Curated date: 2022/03/02

Curator: Shaimaa

Revision editor(s): WikiWorks753, Shaimaa


Location of subjects Country from which study subjects were recruited
Host species Species from which microbiome was sampled (if applicable)
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Meconium Meconium
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
cesarean section caesarean section,cesarean section
Group 0 name Corresponds to the control (unexposed) group for case-control studies
vaginal delivery
Group 1 name Corresponds to the case (exposed) group for case-control studies
Group 0 sample size Number of subjects in the control (unexposed) group
Group 1 sample size Number of subjects in the case (exposed) group
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
oral antibiotics in the third trimester of pregnancy

Lab analysis

Sequencing type Experimental technique used for quantifying microbial abundance
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance

Statistical Analysis

Statistical test Statistical test or computational tool used for differential abundance testing
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool

Alpha Diversity

Richness Number of species