10.3389/Experiment 1

Reviewed Marked as Reviewed by KateRasheed on 2025-5-5

Curated date: 2025/04/15

Curator: Ameenatoloko

Revision editor(s): Ameenatoloko

Host species Species from which microbiome was sampled. Contact us to have more species added.: Branta canadensis

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Exposure Exposure,exposure

Group 0 name Corresponds to the control (unexposed) group for case-control studies: Urban resident geese

Group 1 name Corresponds to the case (exposed) group for case-control studies: Migrant geese

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: Migrant geese were identified as birds that were captured and collared in the Chicago area but spent the breeding season outside of Illinois, travelling up to 2,000 miles to Northern Canada.

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V4-V5

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Illumina

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: relative abundances

Significance threshold p-value or FDR threshold used for differential abundance testing (if any): 0.05

MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?: Yes

Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment: Confounders controlled for: "Season" is not in the list (abnormal glucose tolerance, acetaldehyde, acute graft vs. host disease, acute lymphoblastic leukemia, acute myeloid leukemia, adenoma, age, AIDS, alcohol consumption measurement, alcohol drinking, ...) of allowed values.Season, Confounders controlled for: "Individual Identity" is not in the list (abnormal glucose tolerance, acetaldehyde, acute graft vs. host disease, acute lymphoblastic leukemia, acute myeloid leukemia, adenoma, age, AIDS, alcohol consumption measurement, alcohol drinking, ...) of allowed values.Individual Identity