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BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Slack team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.

About this project

102106Featured Taxon

Collinsella(genus)

cellular organismsBacteriaTerrabacteria groupActinomycetotaCoriobacteriiaCoriobacterialesCoriobacteriaceae

BugSigDB Statistics

• Number of studies: 100 (filter)
• Number of signatures: 126
• Number of direct descendants: 8

Study by nameFeatured Studies

Transplantation of gut microbiota derived from patients with schizophrenia induces schizophrenia-like behaviors and dysregulated brain transcript response in mice
Schizophrenia (Heidelberg, Germany), 2024 | Feces | Schizophrenia | China

Differential Analysis of Gut Microbiota Correlated With Oxidative Stress in Sows With High or Low Litter Performance During Lactation
Frontiers in microbiology, 2018 | Feces | Gut microbiome measurement | China

Taxa

Filter signatures

Fuzzy | Parameterized | Logical operators » ExampleAdvanced Search

Statistics

• 1096 studies
• 5268 signatures
• 2105 unique taxa
• 30 host species
• 80 locations
• 172 body sites
• 401 conditions
• contributed by 171 contributors

Browse all studies by Host species | Body site | Condition | Taxa | Location of subjects.

Top 5 Contributors in the last 30 days

Last 30 days (Top 5)

Rank Score Pages Changes Username 1 380 377 379 Svetlana up 2 261 257 262 Victoria 3 217 203 254 Scholastica 4 66 47 133 Jacob A. De Jesus 5 48 33 92 Aleru Divine

Extended Statistics