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BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Slack team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.

About this project

NCBI.png 186803Featured Taxon
BugSigDB Statistics
  • Number of studies: 252 (filter)
  • Number of signatures: 442
  • Number of direct descendants: 330
Study by nameFeatured Studies
Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats
Microbiology spectrum, 2023 | Feces | Diarrhea, Breed | China
Linking long-term dietary patterns with gut microbial enterotypes
Science (New York, N.Y.), 2011 | Feces | Diet | United States of America

Taxa

Fuzzy | Parameterized | Logical operators » ExampleAdvanced Search
Statistics
  • 1256 studies
  • 6609 signatures
  • 1467 unique taxa
  • 36 host species
  • 80 locations
  • 165 body sites
  • 414 conditions
  • contributed by 172 contributors
Top 5 Contributors in the last 30 days

Last 30 days (Top 5)