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BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org is a community-editable Semantic Mediawiki knowledge management system that simplifies and standardizes the recording, finding, and re-analysis of differential abundance results from all types of metagenomics studies. To contribute please request an account, learn how to contribute or analyze, learn more about the project, provide feedback, or report issues.

About this project

375288Featured Taxon

Parabacteroides(genus)

cellular organismsBacteriaFCB groupBacteroidetes/Chlorobi groupBacteroidotaBacteroidiaBacteroidalesTannerellaceae

BugSigDB Statistics

• Number of studies: 90 (filter)
• Number of signatures: 108
• Number of direct descendants: 7

Study by nameFeatured Studies

Ecological succession in the vaginal microbiota during pregnancy and birth
The ISME journal, 2020 | Vagina | gestational age | United States of America

Ambient Ultrafine Particle Ingestion Alters Gut Microbiota in Association with Increased Atherogenic Lipid Metabolites
Scientific reports, 2017 | Caecum | Air pollution | United States of America

Taxa

AbiotrophiaAbiotrophia defectivaAbiotrophia sp. HMSC24B09AbyssicoccusAbyssicoccus albusAcetanaerobacteriumAcetitomaculumAcetitomaculum ruminisAcetivibrioAcetivibrio cellulolyticusAcetobacterAcetobacteraceaeAcetohalobiumAcholeplasmaAcholeplasmataceaeAcholeplasmatales bacterium canine oral taxon 172AchromobacterAchromobacter sp.AcidaminococcaceaeAcidaminococcalesAcidaminococcusAcidaminococcus intestiniAcidimicrobiaceaeAcidimicrobialesAcidimicrobiiaAcidipropionibacteriumAcidithiobacillaceaeAcidithiobacillusAcidithiobacillus ferrooxidansAcidobacteriaAcidobacteriiaAcidocellaAcidovoraxAcidovorax facilisAcinetobacterAcinetobacter baumanniiAcinetobacter guillouiaeAcinetobacter johnsoniiAcinetobacter lwoffiiAcinetobacter radioresistensAcinetobacter schindleriAcinetobacter ursingiiActinobacillusActinobacteriaActinobaculumActinomycesActinomyces gerencseriaeActinomyces graevenitziiActinomyces israeliiActinomyces johnsoniiActinomyces lingnaeActinomyces naeslundiiActinomyces orisActinomyces pacaensisActinomyces sp.Actinomyces sp. HMSC035G02Actinomyces sp. ICM47Actinomyces sp. oral taxon 172Actinomyces sp. oral taxon 448Actinomyces viscosusActinomycetaceaeActinomycetalesActinomycetiaActinomycetosporaActinotaleaActinotignumActinotignum schaaliiAdlercreutziaAdlercreutzia equolifaciensAdlercreutzia equolifaciens subsp. celatusAdvenellaAeriscardoviaAerococcaceaeAerococcusAerococcus christenseniiAerococcus sanguinicolaAerococcus urinaeAerococcus urinaehominisAeromonadaceaeAeromonadalesAeromonasAeromonas salmonicidaAeromonas veroniiAestuariicoccusAestuariimicrobiumAfipiaAgathobacterAgathobacter sp.AgathobaculumAgathobaculum butyriciproducensAgathobaculum desmolansAggregatibacterAggregatibacter actinomycetemcomitansAggregatibacter aphrophilusAggregatibacter segnisAggregatibacter sp.Aggregatibacter sp. oral taxon 458AgitococcusAgreiaAgrobacteriumAgrobacterium tumefaciensAgrococcusAkkermansiaAkkermansia muciniphilaAkkermansia muciniphila CAG:154Akkermansia sp.AkkermansiaceaeAlcaligenaceaeAlcaligenesAlcaligenes faecalisAlcanivoracaceaeAlcanivoraxAliarcobacterAlicyclobacillaceaeAlicyclobacillusAliivibrioAlishewanellaAlistipesAlistipes finegoldiiAlistipes ihumii AP11Alistipes indistinctusAlistipes onderdonkiiAlistipes putredinisAlistipes senegalensisAlistipes shahiiAlistipes sp.Alistipes sp. enrichment culture cloneAlkalibacillusAlkalibacteriumAlkaliflexusAlkalihalobacillusAlkalihalobacillus alcalophilusAlkalihalobacillus clausiiAlkalilimnicolaAlkaliphilusAlkaliphilus oremlandiiAlkalitaleaAlkanindigesAlkanindiges hongkongensisAllisonellaAllisonella histaminiformansAllobaculumAlloiococcusAlloprevotellaAlloprevotella ravaAlloprevotella sp.Alloprevotella sp. oral taxon 473Alloprevotella tanneraeAlloscardoviaAlloscardovia omnicolensAllosphingosinicellaAlphaproteobacteriaAlterileibacterium massilienseAlternaria alternataAlteromonadaceaeAlteromonadalesAlteromonasAlysiellaAmedibacillusAmedibacillus dolichusAmnimonasAmylolactobacillus amylophilusAnabaenaAnaerobacteriumAnaerobacterium chartisolvensAnaerobiospirillum succiniciproducensAnaerobium acetethylicumAnaerobutyricumAnaerobutyricum halliiAnaerococcusAnaerococcus degeneriAnaerococcus lactolyticusAnaerococcus obesiensisAnaerococcus octaviusAnaerococcus prevotiiAnaerococcus provencensisAnaerococcus sp.Anaerococcus tetradiusAnaerococcus vaginalisAnaerocolumnaAnaerocolumna sedimenticolaAnaerofilumAnaerofustisAnaeroglobusAnaeroglobus geminatusAnaerolineaeAnaeromassilibacillusAnaeromassilibacillus sp. Marseille-P3371AnaeroplasmaAnaeroplasmataceaeAnaeroplasmatalesAnaerorhabdusAnaerosphaeraAnaerosporobacterAnaerostipesAnaerostipes butyraticusAnaerostipes caccaeAnaerostipes hadrusAnaerostipes sp.Anaerostipes sp. 992aAnaerotignumAnaerotignum propionicumAnaerotruncusAnaerotruncus colihominisAnaerotruncus sp.AnaerovibrioAnaerovoraxAnaerovorax odorimutansAneurinibacillusAngelakisellaAnoxybacillusAnoxybacillus kestanbolensisAntricoccusAquabacterAquabacteriumAquamicrobiumAquificaeAquitaleaArachidicoccusArachidicoccus sp.ArachniaArachnia propionicaArcanobacteriumArcanobacterium sp.ArchaeaArchaeoglobaceaeArchangiumArcobacterArmatimonadetesArsenicicoccusArsenophonusArthrobacterArthrospiraAsaccharobacterAsaiaAsaia bogorensisAscochyta herbicolaAscomycotaAspergillusAsteroleplasmaAsticcacaulis excentricusAtopobiaceaeAtopobiumAtopobium deltaeAtopobium minutumAtopobium sp.AurantimicrobiumAureimonasAzorhizobiumAzorhizobium doebereineraeAzospirillumAzotobacter groupBacillaceaeBacillalesBacillales Family X. Incertae SedisBacilliBacillusBacillus amyloliquefaciensBacillus anthracisBacillus cereusBacillus licheniformisBacillus sp. (in: Bacteria)Bacillus subtilisBacteriaBacteroidaceaeBacteroidaceae bacteriumBacteroidalesBacteroidales bacteriumBacteroidales genomosp. P1BacteroidesBacteroides acidifaciensBacteroides caccaeBacteroides cellulosilyticusBacteroides clarusBacteroides eggerthiiBacteroides faecichinchillaeBacteroides faecisBacteroides finegoldiiBacteroides fluxusBacteroides fragilisBacteroides helcogenesBacteroides heparinolyticusBacteroides intestinalisBacteroides mediterraneensisBacteroides nordiiBacteroides oleiciplenusBacteroides ovatusBacteroides salyersiaeBacteroides spBacteroides sp.Bacteroides sp. 2 1 33BBacteroides sp. 3 1 40ABacteroides sp. CAG:530Bacteroides sp. CAG:633Bacteroides sp. CAG:927Bacteroides sp. DJF B097Bacteroides sp. MANGBacteroides stercorisBacteroides thetaiotaomicronBacteroides uniformisBacteroides xylanisolvensBacteroidetesBacteroidiaBacteroidotaBarnesiellaBarnesiella intestinihominisBarnesiellaceaeBartonella clarridgeiaeBartonella sp. na18990nmBavariicoccusBelnapiaBergeyellaBergeyella cardiumBergeyella sp.Bergeyella sp. oral taxon 322BernardetiaBernardetiaceaeBetaproteobacteriaBifidobacteriaceaeBifidobacterialesBifidobacteriumBifidobacterium adolescentisBifidobacterium angulatumBifidobacterium animalisBifidobacterium bifidumBifidobacterium breveBifidobacterium catenulatumBifidobacterium catenulatum subsp. kashiwanohenseBifidobacterium dentiumBifidobacterium longumBifidobacterium longum subsp. longumBifidobacterium pseudocatenulatumBifidobacterium pseudolongumBifidobacterium pseudolongum subsp. globosumBifidobacterium scardoviiBifidobacterium sp.Bifidobacterium subtileBilophilaBilophila sp.Bilophila wadsworthiaBlastococcusBlastomonasBlattabacteriumBlautiaBlautia coccoidesBlautia faecisBlautia gluceraseaBlautia hanseniiBlautia hydrogenotrophicaBlautia lutiBlautia obeumBlautia productaBlautia sp.Blautia sp. Marseille-P2398Blautia wexleraeBordetellaBorreliaBorreliaceaeBoseaBosea thiooxidansBosea vestrisiiBrachybacteriumBrachybacterium murisBrachymonasBrachyspiraBrachyspira hyodysenteriaeBradyrhizobiumBrenneriaBrenneria goodwiniiBrevibacillusBrevibacteriaceaeBrevibacteriumBrevundimonasBrevundimonas diminutaBrevundimonas sp.BrochothrixBrochothrix thermosphactaBrucellaBrucella anthropiBrucella canisBrucella melitensisBrucellaceaeBryobacterBryobacteralesBuchananellaBuchneraBuchnera aphidicolaBulleidiaBulleraBurkholderiaBurkholderia cenocepaciaBurkholderia cepaciaBurkholderia sp.BurkholderiaceaeBurkholderialesBurkholderiales bacteriumBurkholderiales bacterium 1 1 47Burkholderiales genera incertae sedisButtiauxellaButyricicoccusButyricicoccus pullicaecorumButyricicoccus sp.ButyricimonasButyricimonas phoceensisButyricimonas sp. S479Butyricimonas virosaButyrivibrioButyrivibrio crossotusButyrivibrio hungateiButyrivibrio proteoclasticusButyrivibrio sp.CaldibacillusCaldithrixCaldithrix abyssiCalidifontibacterCalvatia complutensisCampylobacterCampylobacter canadensisCampylobacter concisusCampylobacter curvusCampylobacter gracilisCampylobacter hominisCampylobacter jejuniCampylobacter rectusCampylobacter showaeCampylobacter sp.Campylobacter sp. oral taxon 044Campylobacter ureolyticusCampylobacter ureolyticus RIGS 9880CampylobacteraceaeCampylobacteralesCandidaCandida albicansCandida dubliniensisCandida parapsilosisCandida sp. (in: Saccharomycetales)Candidatus AenigmarchaeotaCandidatus Anaerococcus phoceensisCandidatus Arsenophonus lipoptenaeCandidatus Arthromitus sp. SFB-mouseCandidatus AzobacteroidesCandidatus Azobacteroides pseudotrichonymphaeCandidatus BathyarchaeotaCandidatus Blastococcus massiliensisCandidatus BlochmanniaCandidatus Desulfovibrio trichonymphaeCandidatus DoolittleaCandidatus Doolittlea endobiaCandidatus Dorea massiliensisCandidatus EndolissoclinumCandidatus GastranaerophilalesCandidatus GracilibacteriaCandidatus HamiltonellaCandidatus Hamiltonella defensaCandidatus IshikawaellaCandidatus Ishikawaella capsulataCandidatus Liberibacter brunswickensisCandidatus MethanomethylophilusCandidatus MicrothrixCandidatus Moranella endobiaCandidatus NitrosocosmicusCandidatus Pantoea carbekiiCandidatus Peptoniphilus massiliensisCandidatus PhytoplasmaCandidatus PortieraCandidatus RiesiaCandidatus Riesia pediculicolaCandidatus SaccharibacteriaCandidatus Saccharibacteria genomosp. TM7-H1Candidatus SaccharimonadalesCandidatus SaccharimonadiaCandidatus SaccharimonasCandidatus Sodalis pierantoniusCandidatus SoleaferreaCandidatus StoquefichusCandidatus Stoquefichus massiliensisCandidatus SyntrophonatronumCandidatus Syntrophonatronum acetioxidansCanicolaCanna indicaCapnocytophagaCapnocytophaga canimorsusCapnocytophaga gingivalisCapnocytophaga granulosaCapnocytophaga haemolyticaCapnocytophaga leadbetteriCapnocytophaga ochraceaCapnocytophaga sp.Capnocytophaga sputigenaCaproiciproducensCardiobacteriaceaeCardiobacterialesCardiobacteriumCardiobacterium hominisCardiobacterium valvarumCarnobacteriaceaeCarnobacteriumCarnobacterium divergensCarnobacterium maltaromaticumCasaltellaCatellicoccusCatenibacteriumCatenibacterium mitsuokaiCatenisphaeraCatonellaCatonella morbiCaulobacterCaulobacteraceaeCaulobacteralesCedeceaCedecea neteriCellulomonasCellulosilyticumCellulosilyticum ruminicolaCellulosimicrobiumCellvibrionaceaeCentipedaCereibacterCetobacteriumChelatococcusChitinophagaChitinophaga pinensisChitinophagaceaeChlamydiaChlamydia trachomatisChlamydiaceaeChlamydiaeChlamydialesChlamydiiaChlorobiChlorobium chlorochromatiiChloroflexiChlorogloeaChristensenellaChristensenella hongkongensisChristensenella massiliensisChristensenella minutaChristensenellaceaeChromobacteriaceaeChromohalobacterChroococcidiopsisChryseobacteriumChryseobacterium camelliaeChryseobacterium cucumerisChryseobacterium gleumChryseobacterium sp.Chryseobacterium sp. IHB B 17019ChujaibacterCitricoccusCitrobacterCitrobacter braakiiCitrobacter freundiiCitrobacter freundii complex sp. CFNIH3Citrobacter koseriCitrobacter sp.Cladosporium flabelliformeCladosporium herbarumClavibacterClavibacter michiganensisCloacibacillusCloacibacillus porcorumCloacibacteriumCloacibacterium sp.ClostridiaClostridiaceaeClostridiales Family XIII bacteriumClostridiales bacteriumClostridiales bacterium CCNA10Clostridiales bacterium CIEAF 012ClostridioidesClostridioides difficileClostridiumClostridium baratiiClostridium beijerinckiiClostridium botulinumClostridium butyricumClostridium carboxidivoransClostridium chauvoeiClostridium colicanisClostridium fusiformisClostridium hathewayi CAG:224Clostridium lacusfryxellenseClostridium leptum CAG:27Clostridium neonataleClostridium paraputrificumClostridium perfringensClostridium saccharobutylicumClostridium saccharoperbutylacetonicumClostridium sp.Clostridium sp. 001Clostridium sp. 14505Clostridium sp. A9Clostridium sp. BPY5Clostridium sp. D5Clostridium sp. ID5Clostridium sp. L2-50Clostridium sp. M62/1Clostridium sp. TM-40Clostridium sp. enrichment cultureClostridium sp. enrichment culture clone 7-14Clostridium tertiumClostridium tetaniColidextribacterCollinsellaCollinsella aerofaciensCollinsella intestinalisCollinsella stercorisCollinsella tanakaeiComamonadaceaeComamonasComamonas terrigenaComamonas testosteroniCommensalibacterCompanilactobacillusCompsobata cibariaConexibacterCoprobacillusCoprobacillus cateniformisCoprobacillus sp.CoprobacterCoprobacter fastidiosusCoprococcusCoprococcus catusCoprococcus comesCoprococcus eutactusCoprococcus sp.Coprococcus sp. ART55/1Coptotermes heimiCoriobacteriaceaeCoriobacterialesCoriobacteriiaCoriobacteriumCorticimicrobacterCorynebacteriaceaeCorynebacterialesCorynebacteriumCorynebacterium accolensCorynebacterium afermentansCorynebacterium amycolatumCorynebacterium atypicumCorynebacterium aurimucosumCorynebacterium coyleaeCorynebacterium durumCorynebacterium glucuronolyticumCorynebacterium imitansCorynebacterium kroppenstedtiiCorynebacterium matruchotiiCorynebacterium pseudogenitaliumCorynebacterium pyruviciproducensCorynebacterium simulansCorynebacterium sp.Corynebacterium sp. IrT-R5M2-141Corynebacterium sp. NML96-0085Corynebacterium striatumCorynebacterium sundsvallenseCorynebacterium tuberculostearicumCorynebacterium tuscanienseCoxiellaCoxiella endosymbiont of Amblyomma americanumCoxiellaceaeCrenarchaeotaCriibacteriumCrinaliumCrocosphaera subtropica ATCC 51142CronobacterCronobacter sakazakiiCruoricaptorCryobacteriumCryptobacteriumCryptobacterium curtumCryptococcusCupriavidusCurtobacteriumCurvibacterCutibacteriumCutibacterium acnesCutibacterium granulosumCutibacterium namnetenseCyanobacteriaCyanobacteria incertae sedisCytobacillusCytophagaceaeDavidiellaDechloromonasDeferribacterDeferribacter desulfuricansDeferribacteraceaeDeferribacteralesDeferribacteresDefluviitaleaDefluviitaleaceaeDehalobacteriumDehalobacterium formicoaceticumDehalococcoidaceaeDehalogenimonasDeinococcaceaeDeinococcalesDeinococciDeinococcusDeinococcus desertiDeinococcus radiopugnansDeinococcus-ThermusDelftiaDelftia acidovoransDelftia tsuruhatensisDellaglioaDeltaproteobacteriaDemequinaceaeDenitrobacteriumDermabacterDermabacteraceaeDermacoccusDerxiaDesemziaDesulfitobacterium hafnienseDesulfobacteraceaeDesulfobacteralesDesulfobacterotaDesulfobotulus sp.DesulfobulbaceaeDesulfobulbusDesulfobulbus sp.DesulfohalobiaceaeDesulfomicrobiumDesulfonauticusDesulforamulus ruminisDesulfosporosinusDesulfosporosinus acidiphilusDesulfovibrioDesulfovibrio desulfuricansDesulfovibrio intestinalisDesulfovibrio longreachensisDesulfovibrio pigerDesulfovibrio piger ATCC 29098Desulfovibrio sp. LNB2Desulfovibrio vulgarisDesulfovibrionaceaeDesulfovibrionalesDesulfurococcaceaeDesulfuromonasDevosiaDevosia riboflavinaDialisterDialister invisusDialister micraerophilusDialister pneumosintesDialister propionicifaciensDialister sp.Dialister sp. S7DDialister succinatiphilusDiaphorobacterDichotomicrobiumDickeyaDictyosteliumDielmaDietziaDioszegiaDolosicoccusDolosigranulumDolosigranulum pigrumDoreaDorea formicigeneransDorea longicatenaDorea sp.DubosiellaDuganellaDuncaniellaDyellaDyella koreensisDysgonomonasDysgonomonas gadeiEctothiorhodospiraceaeEdaphobacterEdwardsiellaEdwardsiella ictaluriEggerthellaEggerthella lentaEggerthellaceaeEggerthiaEikenellaEikenella corrodensEikenella glucosivoransEisenbergiellaEisenbergiella massiliensisEisenbergiella sp.ElizabethkingiaElusimicrobiaElusimicrobiumEmpedobacterEnchelyodon sp.EnhydrobacterEnhydrobacter aerosaccusEnhydrobacter sp.EnormaEnsiferEntamoebaEnterobacterEnterobacter asburiaeEnterobacter bugandensisEnterobacter cancerogenusEnterobacter cloacaeEnterobacter cloacae complex sp.Enterobacter hormaecheiEnterobacter kobeiEnterobacter oligotrophicusEnterobacter roggenkampiiEnterobacter soliEnterobacter sp. 638Enterobacter sp. E76Enterobacter sp. ODB01Enterobacter sp. T2Enterobacter sp. enrichment culture clone HSL70EnterobacteralesEnterobacteriaceaeEnterobacteriaceae bacteriumEnteroclosterEnterocloster aldenensisEnterocloster asparagiformisEnterocloster bolteaeEnterocloster citroniaeEnterocloster clostridioformisEnterocloster lavalensisEnterococcaceaeEnterococcusEnterococcus aviumEnterococcus casseliflavusEnterococcus cecorumEnterococcus disparEnterococcus duransEnterococcus faecalisEnterococcus faeciumEnterococcus gallinarumEnterococcus hiraeEnterococcus rivorumEnterococcus sp.Enterococcus sp. DJF SLA47Enterococcus thailandicusEnterorhabdusEntomoplasmataceaeEpidiniumEpilithonimonasEpsilonproteobacteriaEpulopisciumEremococcusErwiniaErwinia amylovoraErwinia billingiaeErwinia sp.ErwiniaceaeErysipelatoclostridiumErysipelatoclostridium ramosumErysipelothrixErysipelothrix larvaeErysipelothrix sp. HDW6BErysipelotrichaceaeErysipelotrichaceae bacterium 2 2 44AErysipelotrichaceae bacterium 21 3Erysipelotrichaceae bacterium 6 1 45Erysipelotrichaceae incertae sedisErysipelotrichalesErysipelotrichiaEscherichiaEscherichia albertiiEscherichia coliEscherichia fergusoniiEscherichia sp. C71Escherichia/Shigella sp.EthanoligenensEthanoligenens harbinenseEubacteriaceaeEubacterialesEubacteriales Family XIII. Incertae SedisEubacteriumEubacterium coprostanoligenesEubacterium dolichum CAG:375Eubacterium limosumEubacterium ramulusEubacterium rectale CAG:36Eubacterium ruminantiumEubacterium sp.Eubacterium sp. CAG:38Eubacterium ventriosumEubacterium xylanophilumEuryarchaeotaEwingellaExiguobacteriumEzakiellaEzakiella coagulansEzakiella massiliensisFacklamiaFacklamia hominisFaecalibacteriumFaecalibacterium prausnitziiFaecalibacterium sp.Faecalibacterium sp. UBA1819FaecalibaculumFaecalicatenaFaecalicatena fissicatenaFaecalicatena oroticaFaecalicoccusFaecalitaleaFannyhesseaFannyhessea vaginaeFastidiosipilaFenollariaFenollaria massiliensisFermentimonas caenicolaFibrellaFibrobacter succinogenesFibrobacteresFilifactorFilifactor alocisFilimonas lacunaeFimbriiglobusFimbriimonas ginsengisoliFinegoldiaFinegoldia magnaFinegoldia sp.FirmicutesFirmicutes bacterium ASF500Firmicutes bacterium CAG:110Firmicutes bacterium CAG:83FlavobacteriaceaeFlavobacteriaceae bacterium 3519-10FlavobacterialesFlavobacteriiaFlavobacteriumFlavobacterium columnareFlavobacterium gelidilacusFlavobacterium sp.FlavonifractorFlavonifractor plautiiFlexispiraFonticellaFormosaFrancisella hispaniensisFranconibacterFretibacteriumFretibacterium fastidiosumFretibacterium sp.FriedmanniellaFrischellaFructilactobacillusFructilactobacillus sanfranciscensisFurfurilactobacillus rossiaeFusicatenibacterFusicatenibacter saccharivoransFusobacteriaFusobacteriaceaeFusobacterialesFusobacteriiaFusobacteriumFusobacterium canifelinumFusobacterium mortiferumFusobacterium necrophorumFusobacterium nucleatumFusobacterium nucleatum subsp. animalisFusobacterium nucleatum subsp. vincentiiFusobacterium perfoetensFusobacterium periodonticumFusobacterium pseudoperiodonticumFusobacterium sp.Fusobacterium ulceransFusobacterium variumGaiellaGaiellaceaeGallicolaGallionellaGallionella capsiferriformansGalloisiana yuasaiGammaproteobacteriaGanodermaGardnerellaGardnerella vaginalisGemellaGemella asaccharolyticaGemella bergeriGemella haemolysansGemella morbillorumGemella sanguinisGemella sp.Gemella sp. oral taxon 928Gemella taiwanensisGemmataGemmatimonadalesGemmatimonadetesGemmatimonasGemmigerGemmiger formicilisGeobacillusGeobacter sp. M18GeodermatophilaceaeGeodermatophilusGeorgeniaGeothrixGerres decacanthusGilliamellaGillisiaGilvibacterGleimia europaeaGlobicatellaGluconacetobacterGluconobacterGlutamicibacterGorbachellaGordoniaGordonibacterGordonibacter pamelaeaeGracilibacterGranulicatellaGranulicatella adiacensGranulicatella elegansGranulicatella sp.GranulicellaGulbenkianiaHaematobacterHaematospirillum jordaniaeHaemophilusHaemophilus haemolyticusHaemophilus influenzaeHaemophilus parahaemolyticusHaemophilus parainfluenzaeHaemophilus pittmaniaeHaemophilus quentiniHaemophilus sp.Haemophilus sputorumHafniaHalanaerobiaceaeHalanaerobiumHalioglobusHalioglobus pacificusHallellaHaloanellaHalobacillus mangroviHalobacterialesHaloferaxHalomonadaceaeHalomonasHalopseudomonas sabulinigriHalorubrumHalorubrum lacusprofundiHalorubrum sp.HalothiobacillaceaeHalothiobacillusHalothiobacillus neapolitanusHarryflintiaHarryflintia acetisporaHathewayaHathewaya histolyticaHelcococcusHelicobacterHelicobacter marmotaeHelicobacter pyloriHelicobacter sp.HelicobacteraceaeHeliobacteriaceaeHephaestiaHerbaspirillumHerbinix luporumHespelliaHoldemanellaHoldemanella biformisHoldemaniaHoldemania filiformisHoldemania massiliensisHolophagalesHornefiaHowardellaHowardella ureilyticaHungatellaHungatella hathewayiHydrocarboniphagaHydrogenibacillusHydrogenoanaerobacteriumHydrogenophagaHydrogenophilaceaeHydrogenophilalesHydrogenophilusHydrotaleaHymenobacterHyphomicrobiaceaeHyphomicrobialesHyphomicrobiumHypogastrura sp. BOLD:AAI2333IgnavibacteriaIgnavibacterialesIgnavigranumIhubacterIleibacteriumImmundisolibacterInfluenza A virus (A/Thailand/VIROAF2CS/2012(H3N2))IntestinibacterIntestinibacter bartlettiiIntestinimonasIntestinimonas butyriciproducensIntestinimonas sp. FSAA-17IntrasporangiaceaeJanibacterJanthinobacteriumJaponacteon suturalisJeotgalibacillusJeotgalicoccusJohnsonellaJohnsonella ignavaJonquetellaKaistellaKallipyga massiliensisKerstersiaKiloniellaceaeKingellaKingella denitrificansKingella oralisKlebsiellaKlebsiella aerogenesKlebsiella michiganensisKlebsiella oxytocaKlebsiella pneumoniaeKlebsiella quasipneumoniaeKlebsiella variicolaKluyveraKnoelliaKocuriaKocuria palustrisKosakoniaKosakonia cowaniiKosmotogaceaeKouleothrixKroppenstedtiaKurthiaKytococcusKytococcus sedentariusLabilithrix luteolaLachnoanaerobaculumLachnoanaerobaculum oraleLachnoanaerobaculum saburreumLachnoanaerobaculum sp. ICM7Lachnoanaerobaculum umeaenseLachnobacteriumLachnobacterium bovisLachnoclostridiumLachnoclostridium edouardiLachnoclostridium phytofermentansLachnoclostridium phytofermentans ISDgLachnospiraLachnospira eligensLachnospira multiparaLachnospira pectinoschizaLachnospira sp.LachnospiraceaeLachnospiraceae bacteriumLachnospiraceae bacterium 1 1 57FAALachnospiraceae bacterium 1 4 56FAALachnospiraceae bacterium 2 1 46FAALachnospiraceae bacterium 2 1 58FAALachnospiraceae bacterium 3 1 57FAA CT1Lachnospiraceae bacterium 5 1 63FAALachnospiraceae bacterium 7 1 58FAALachnospiraceae bacterium 8 1 57FAALachnospiraceae bacterium A4Lachnospiraceae bacterium MC 35Lachnospiraceae bacterium NC2004Lachnospiraceae bacterium ND3006Lachnospiraceae bacterium NK4A136Lachnospiraceae bacterium oral taxon 500Lachnospiraceae incertae sedisLachnotalea glyceriniLacimicrobium alkaliphilumLacrimisporaLacrimispora saccharolyticaLacrimispora sphenoidesLacticaseibacillusLacticaseibacillus paracaseiLacticaseibacillus zeaeLactiplantibacillusLactiplantibacillus plantarumLactivibrioLactobacillaceaeLactobacillalesLactobacillusLactobacillus acidophilusLactobacillus amylovorusLactobacillus crispatusLactobacillus delbrueckiiLactobacillus equicursorisLactobacillus fornicalisLactobacillus gallinarumLactobacillus gasseriLactobacillus helveticusLactobacillus inersLactobacillus jenseniiLactobacillus johnsoniiLactobacillus rogosaeLactobacillus sp.Lactobacillus sp. T17/4FLactobacillus ultunensisLactococcusLactococcus lactisLactococcus pisciumLactococcus sp.LactonifactorLactonifactor longoviformisLagierella massiliensisLancefieldellaLancefieldella parvulaLancefieldella rimaeLapidilactobacillusLatilactobacillusLatilactobacillus curvatusLatilactobacillus sakeiLautropiaLautropia mirabilisLawsonellaLawsoniaLawsonibacterLeclerciaLeclercia adecarboxylataLeclercia sp. 29361Leclercia sp. J807Leclercia sp. LSNIH1Leclercia sp. W17LegionellaLegionella clemsonensisLegionellaceaeLegionellalesLeifsoniaLeishmaniaLelliottia amnigenaLelliottia jeotgaliLelliottia sp. WB101LentibacillusLentilactobacillusLentilactobacillus buchneriLentimicrobiaceaeLentisphaeraLentisphaeraeLentisphaeriaLeptospiraLeptospira interrogansLeptothrixLeptotrichiaLeptotrichia buccalisLeptotrichia hofstadiiLeptotrichia hongkongensisLeptotrichia shahiiLeptotrichia sp.Leptotrichia sp. oral taxon 212Leptotrichia sp. oral taxon 215Leptotrichia sp. oral taxon 221Leptotrichia sp. oral taxon 223Leptotrichia sp. oral taxon 225Leptotrichia sp. oral taxon 417Leptotrichia sp. oral taxon 879Leptotrichia wadeiLeptotrichiaceaeLeucobacterLeuconostocLeuconostoc gelidumLeuconostoc gelidum subsp. gasicomitatumLeuconostoc lactisLeucosporidiumLevilactobacillusLevilactobacillus brevisLigilactobacillusLigilactobacillus animalisLigilactobacillus murinusLigilactobacillus ruminisLigilactobacillus salivariusLimnobacterLimnochordaLimnohabitansLimosilactobacillusLimosilactobacillus antriLimosilactobacillus coleohominisLimosilactobacillus fermentumLimosilactobacillus gastricusLimosilactobacillus mucosaeLimosilactobacillus orisLimosilactobacillus panisLimosilactobacillus reuteriLimosilactobacillus vaginalisLiquorilactobacillusLiquorilactobacillus nageliiListeriaListeriaceaeLockhartia amoenaLoigolactobacillusLongilineaLuteipulveratusLuteococcusLysinibacillusLysinibacillus sp. B2A1Lysinibacillus sphaericusLysobacterMacrococcusMacrococcus caseolyticusMageeibacillusMageeibacillus indolicusMalasseziaMalassezia globosaMalassezia restrictaMammaliicoccusMannheimiaMargalitiaMarinifilaceaeMarinifilaceae bacteriumMarinifilum sp.MarinobacterMarmoricolaMarseillibacter massiliensisMarvinbryantiaMarvinbryantia formatexigensMassiliaMassilia alkalitoleransMassilia aureaMassilistercora timonensisMediterraneaMediterraneibacterMediterraneibacter glycyrrhizinilyticusMegamonasMegamonas funiformisMegamonas hypermegaleMegamonas rupellensisMegamonas sp.MegasphaeraMegasphaera elsdeniiMegasphaera massiliensisMegasphaera micronuciformisMegasphaera sp.Megasphaera sp. DNF00912MeiothermusMelaminivoraMelissococcusMelissococcus plutoniusMesomycoplasma hyorhinisMesoplasmaMesorhizobiumMesotogaMesotoga primaMetakosakoniaMetamycoplasma fauciumMetamycoplasma hominisMetaprevotellaMetaprevotella massiliensisMethanobacteriaMethanobacteriaceaeMethanobacterialesMethanobrevibacterMethanobrevibacter smithiiMethanobrevibacter sp.MethanocorpusculaceaeMethanomassiliicoccusMethanosphaeraMethylibiumMethylobacillus flagellatusMethylobacillus glycogenesMethylobacteriaceaeMethylobacteriumMethylobacterium radiotoleransMethylobacterium sp. DM1MethyloceanibacterMethylorubrumMethyloversatilisMicavibrio aeruginosavorusMicrobacteriaceaeMicrobacteriumMicrobacterium barkeriMicrococcaceaeMicrococcalesMicrococcusMicrococcus luteusMicrocoleusMicrolunatusMicromonosporaMicromonosporaceaeMicropruinaMicroscillaceaeMicrothrixaceaeMicrotrichalusMicrovirgaMicrovirga lupiniMicrovirgulaMitsuokellaMitsuokella multacidaMitsuokella sp.MixtaMobiluncusMobiluncus curtisiiMobiluncus mulierisModestobacterMoellerellaMogibacteriumMogibacterium diversumMogibacterium neglectumMogibacterium timidumMollicutesMonoglobusMoraxellaMoraxella osloensisMoraxellaceaeMorganellaMorganella morganiiMorganellaceaeMoritella abyssiMoritellaceaeMorococcusMortierellaMoryellaMoryella indoligenesMucilaginibacterMucispirillumMucispirillum schaedleriMurdochiellaMurdochiella asaccharolyticaMuribaculaceaeMuribaculumMurimonasMycobacteriaceaeMycobacteriumMycobacterium kansasiiMycobacteroidesMycolicibacterMycolicibacteriumMycolicibacterium fortuitumMycolicibacterium phleiMycoplanaMycoplasmaMycoplasmataceaeMycoplasmatalesMycoplasmopsisMyxococcalesNaganishiaNakamurellaNakamurella multipartitaNakamurellaceaeNannocystisNegativicoccusNegativicutesNeisseriaNeisseria bacilliformisNeisseria elongataNeisseria flavaNeisseria flavescensNeisseria gonorrhoeaeNeisseria mucosaNeisseria oralisNeisseria siccaNeisseria sp.Neisseria sp. GHG17Neisseria subflavaNeisseria weaveriNeisseriaceaeNeisserialesNesterenkoniaNeurosporaNevskiaNitrobacteraceaeNitrosococcus halophilusNitrosomonadaceaeNitrosomonasNitrosomonas sp.NitrososphaeraNitrososphaeraceaeNitrososphaeralesNitrosospiraNitrosospira multiformisNitrospiraNiveispirillumNocardiaNocardia brevicatenaNocardiaceaeNocardioidaceaeNocardioidesNocardiopsisNostoc punctiformeNovosphingobiumNovosphingobium aromaticivoransOceanobacillusOceanobacillus profundusOceanospirillalesOchrobactrumOdoribacterOdoribacter laneusOdoribacter splanchnicusOdoribacteraceaeOenococcusOhtaekwangiaOkadaellaOleidesulfovibrio alaskensisOleidesulfovibrio vietnamensisOligellaOligosphaeraOlsenellaOlsenella profusaOlsenella sp. oral taxon 807Olsenella uliOribacteriumOribacterium asaccharolyticumOribacterium parvumOribacterium sinusOribacterium sp.Oribacterium sp. CM12Oribacterium sp. oral taxon 078Oribacterium sp. oral taxon 108OrnithinimicrobiumOscillatoriaOscillibacterOscillibacter sp.Oscillibacter sp. 57 20Oscillibacter sp. CAG:241Oscillibacter sp. Marseille-P3260Oscillibacter valericigenesOscillospiraOscillospira guilliermondiiOscillospiraceaeOscillospiraceae bacteriumOscillospiraceae incertae sedisOttowiaOttowia sp.OvatusOxalicibacteriumOxalobacterOxalobacter formigenesOxalobacteraceaeOxychloePacaellaPacaella massiliensisPaenibacillaceaePaenibacillusPaenibacillus graminisPaenibacillus guangzhouensisPaenibacillus mucilaginosusPaenibacillus swuensisPaeniclostridiumPaeniclostridium sordelliiPaludibacterPaludisphaeraPantoeaPantoea agglomeransPantoea ananatisPantoea sp. SO10PapillibacterPapillibacter cinnamivoransParabacteroidesParabacteroides distasonisParabacteroides faecisParabacteroides goldsteiniiParabacteroides johnsoniiParabacteroides merdaeParabacteroides sp.ParaclostridiumParacoccusParacoccus denitrificansParaeggerthellaParaliobacillusParaprevotellaParaprevotella claraParascardoviaParascardovia denticolensParasporobacteriumParasutterellaParasutterella excrementihominisParolsenellaParvibacterParvimonasParvimonas micraParvimonas sp.PasteurellaPasteurella multocidaPasteurellaceaePasteurellalesPasteuriaceaePatescibacteria groupPatulibacterPaucibacterPaucilactobacillusPauljenseniaPectobacteriaceaePectobacteriumPectobacterium atrosepticumPediococcusPedobacterPedobacter cryoconitisPedobacter heparinusPedobacter panaciterraePelagibacteriumPelistegaPelomonasPelomonas puraquaePelomonas saccharophilaPelomonas sp.PenicilliumPeptacetobacterPeptacetobacter hiranonisPeptoanaerobacterPeptoclostridiumPeptococcaceaePeptococcusPeptococcus sp.PeptoniphilaceaePeptoniphilusPeptoniphilus asaccharolyticusPeptoniphilus coxiiPeptoniphilus duerdeniiPeptoniphilus gorbachiiPeptoniphilus grossensisPeptoniphilus hareiPeptoniphilus indolicusPeptoniphilus lacrimalisPeptoniphilus sp.Peptoniphilus sp. S276Peptoniphilus sp. S362Peptoniphilus sp. S470Peptoniphilus sp. gpac007Peptoniphilus sp. oral taxon 375PeptostreptococcaceaePeptostreptococcaceae bacteriumPeptostreptococcaceae incertae sedisPeptostreptococcusPeptostreptococcus anaerobiusPeptostreptococcus sp.Peptostreptococcus stomatisPeribacillusPeribacillus frigoritoleransPhascolarctobacteriumPhascolarctobacterium faeciumPhascolarctobacterium succinatutensPhenylobacteriumPhocaeicolaPhocaeicola coprocolaPhocaeicola coprocola DSM 17136Phocaeicola coprophilusPhocaeicola doreiPhocaeicola massiliensisPhocaeicola plebeiusPhocaeicola plebeius DSM 17135Phocaeicola salanitronisPhocaeicola sartoriiPhocaeicola vulgatusPhoceaPhotobacteriumPhotobacterium damselaePhotorhabdusPhyllobacteriaceaePhyllobacteriumPhyllobacterium myrsinacearumPhyllobacterium sp.PhytobacterPlanctomycetalesPlanctomycetesPlanifilumPlanktothrix agardhiiPlanococcaceaePlanomicrobiumPlantibacterPlautia stali symbiontPlesiomonasPluralibacterPluralibacter gergoviaePneumocystisPontibacillusPorphyrobacterPorphyromonadaceaePorphyromonasPorphyromonas asaccharolyticaPorphyromonas asaccharolytica DSM 20707Porphyromonas bennonisPorphyromonas cangingivalisPorphyromonas catoniaePorphyromonas circumdentariaPorphyromonas endodontalisPorphyromonas gingivalisPorphyromonas pasteriPorphyromonas someraePorphyromonas sp.Porphyromonas uenonisPrauserellaPrevotellaPrevotella amniiPrevotella baroniaePrevotella bergensisPrevotella biviaPrevotella buccaePrevotella buccalisPrevotella coloransPrevotella copriPrevotella corporisPrevotella dentalisPrevotella denticolaPrevotella denticola F0289Prevotella disiensPrevotella enoecaPrevotella fuscaPrevotella genomosp. P6Prevotella histicolaPrevotella intermediaPrevotella intermedia 17Prevotella jejuniPrevotella loescheiiPrevotella maculosaPrevotella marshiiPrevotella melaninogenicaPrevotella micansPrevotella multiformisPrevotella multisaccharivoraxPrevotella nanceiensisPrevotella nigrescensPrevotella oralisPrevotella orisPrevotella oulorumPrevotella pallensPrevotella paludivivensPrevotella pleuritidisPrevotella raraPrevotella ruminicolaPrevotella ruminicola 23Prevotella salivaePrevotella shahiiPrevotella sp.Prevotella sp. 2-3Prevotella sp. BI-42Prevotella sp. CAG:1031Prevotella sp. CAG:279Prevotella sp. CAG:485Prevotella sp. CAG:873Prevotella sp. DJF RP53Prevotella sp. MC 18Prevotella sp. S4-8Prevotella sp. S8 F8Prevotella sp. oral clone BR014Prevotella sp. oral clone GU027Prevotella sp. oral taxon 299 str. F0039Prevotella sp. oral taxon 304Prevotella sp. oral taxon 306Prevotella sp. oral taxon 313Prevotella sp. oral taxon 314Prevotella sp. oral taxon G70Prevotella stercoreaPrevotella timonensisPrevotella veroralisPrevotellaceaePriestiaPriestia flexaPriestia megateriumProlinoborusPropionibacteriaceaePropionibacterialesPropionibacteriumPropionibacterium sp. oral taxon 194PropioniferaxPropioniferax innocuaPropionimicrobiumProsthecobacterProteobacteriaProteusProteus mirabilisProteus vulgarisProvidenciaProvidencia rettgeriProvidencia stuartiiProvidencia vermicolaPseudarcicellaPseudarthrobacterPseudarthrobacter oxydansPseudescherichiaPseudoalteromonadaceaePseudoalteromonasPseudobutyrivibrioPseudocitrobacterPseudoclavibacterPseudoduganellaPseudoflavonifractorPseudoflavonifractor capillosusPseudoglutamicibacterPseudoleptotrichiaPseudoleptotrichia goodfellowiiPseudoleptotrichia goodfellowii D28PseudomonadaceaePseudomonadalesPseudomonasPseudomonas aeruginosaPseudomonas alcaligenesPseudomonas alkylphenolicaPseudomonas fragiPseudomonas mendocinaPseudomonas oleovoransPseudomonas oryzihabitansPseudomonas putidaPseudomonas rhodesiaePseudomonas sp.Pseudomonas sp. JY-QPseudomonas sp. MRSN12121Pseudomonas sp. PONIH3Pseudomonas sp. XWY-1Pseudomonas stutzeriPseudomonas tolaasiiPseudomonas veroniiPseudomonas viridiflavaPseudonocardiaPseudonocardiaceaePseudonocardialesPseudoramibacterPseudoscardoviaPseudothermotogaPseudoxanthomonasPsychrobacillusPsychrobacterPulveribacterPyramidobacterPyramidobacter piscolensPyrococcusQuinellaRahnellaRahnella aquatilisRalstoniaRalstonia pickettiiRalstonia solanacearumRaoultellaRaoultella ornithinolyticaRheinheimeraRhizobiaceaeRhizobiumRhodanobacterRhodobacterRhodobacteraceaeRhodobacteralesRhodococcusRhodococcus erythropolisRhodococcus sp.RhodocyclaceaeRhodocyclalesRhodoferaxRhodospirillaceaeRhodospirillalesRhodotorulaRickenellaceaeRickettsiaRickettsialesRickettsiales bacterium Ac37bRickettsiellaRickettsiella massiliensisRikenellaRikenellaceaeRobinsoniellaRodentibacterRomboutsiaRomboutsia lituseburensisRomboutsia sedimentorumRoseburiaRoseburia faecisRoseburia hominisRoseburia intestinalisRoseburia inulinivoransRoseburia sp.Roseburia sp. 1120Roseburia sp. 11SE38Roseburia sp. CAG:471RoseicellaRoseiflexusRoseomonasRoseomonas mucosaRossellomoreaRothiaRothia aeriaRothia dentocariosaRothia mucilaginosaRothia sp.Rothia sp. HSID18069Rothia terraeRotylenchus urmiaensisRouxiellaRubellimicrobiumRubrivivaxRubrobacterRubrobacter radiotoleransRubrobacteraceaeRubrobacteralesRubrobacteriaRuminiclostridiumRuminiclostridium hungateiRuminiclostridium papyrosolvensRuminiclostridium sp.Ruminobacter amylophilusRuminococcusRuminococcus bicirculansRuminococcus bromiiRuminococcus callidusRuminococcus champanellensisRuminococcus flavefaciensRuminococcus gauvreauiiRuminococcus obeum CAG:39Ruminococcus sp.Ruminococcus sp. 5 1 39BFAARuminococcus sp. 653Ruminococcus sp. Marseille-P328RunellaRunella slithyformisRuthenibacteriumRuthenibacterium lactatiformansSR1 bacterium oral taxon 874SR1 bacterium oral taxon 875SaccharicrinisSaccharofermentansSaccharofermentans acetigenesSaccharomycesSaccharomyces cerevisiaeSaccharomyces sp.SaccharophagusSaccharophagus degradansSaccharopolysporaSaitoellaSalinibacterSalinicoccusSalinicolaSalipigerSalmonellaSalmonella entericaSalmonella enterica subsp. enterica serovar InfantisSalmonella sp.SanguibacterSarcinaScardoviaScardovia inopinataScardovia wiggsiaeSchaaliaSchaalia cardiffensisSchaalia georgiaeSchaalia meyeriSchaalia odontolyticaSchaalia turicensisSchizophyllum sp.SchlegelellaSchlegelella thermodepolymeransSchleiferilactobacillusSchwartziaScriptaphyosemion liberienseSediminibacteriumSelenomonadaceaeSelenomonadalesSelenomonasSelenomonas artemidisSelenomonas dianaeSelenomonas flueggeiSelenomonas noxiaSelenomonas ruminantiumSelenomonas sp.Selenomonas sp. oral clone DO042Selenomonas sp. oral taxon 478Selenomonas sp. oral taxon 920Selenomonas sputigenaSellimonasSellimonas sp.SenegalimassiliaSenegalimassilia anaerobiaSerinicoccusSerratiaSerratia marcescensSharpeaShewanellaShewanella algaeShewanella japonicaShewanella putrefaciensShewanellaceaeShigellaShigella boydiiShigella dysenteriaeShigella flexneriShigella sonneiShimwelliaShuttleworthiaShuttleworthia satellesSiccibacterSimonsiellaSkermanellaSlackiaSlackia exiguaSlackia heliotrinireducensSlackia isoflavoniconvertensSlackia sp.SneathiaSneathia sanguinegensSneathia vaginalisSnodgrassellaSodalisSodalis endosymbiont of Henestaris halophilusSodalis glossinidiusSodalis praecaptivusSolibacillusSolimonasSolirubrobacterSolirubrobacteralesSolobacteriumSolobacterium mooreiSoonwooaSpartobacteriaSphaerochaetaSphingobacteriaceaeSphingobacterialesSphingobacteriiaSphingobacteriumSphingobacterium multivorumSphingobacterium sp. B29Sphingobacterium sp. G1-14Sphingobacterium spiritivorumSphingobiumSphingobium xenophagumSphingobium yanoikuyaeSphingomonadaceaeSphingomonadalesSphingomonasSphingomonas azotifigensSphingomonas leidyiSphingomonas sp. FARSPHSphingomonas yabuuchiaeSphingopyxisSphingopyxis alaskensisSpirochaetaSpirochaetaceaeSpirochaetalesSpirochaetesSpirochaetiaSpiroplasmaSporacetigeniumSporidiobolaceaeSporobacterSporobacter termitidisSporobacteriumSporolactobacillaceaeSporolactobacillusSporomusaceaeSporosarcinaStaphylococcaceaeStaphylococcusStaphylococcus aureusStaphylococcus capitisStaphylococcus capraeStaphylococcus epidermidisStaphylococcus haemolyticusStaphylococcus hominisStaphylococcus sp.Staphylococcus warneriStappiaStarkeyaStenotrophomonasStenotrophomonas acidaminiphilaStenotrophomonas maltophiliaStenotrophomonas sp. LM091SterigmatomycesStomatobaculumStomatobaculum longumStreptobacillusStreptobacillus moniliformisStreptococcaceaeStreptococcusStreptococcus agalactiaeStreptococcus anginosusStreptococcus australisStreptococcus constellatusStreptococcus cristatusStreptococcus dysgalactiaeStreptococcus equinusStreptococcus gallolyticusStreptococcus gordoniiStreptococcus ileiStreptococcus infantisStreptococcus intermediusStreptococcus koreensisStreptococcus marmotaeStreptococcus mitisStreptococcus mutansStreptococcus oralisStreptococcus oralis subsp. tigurinusStreptococcus parasanguinisStreptococcus pasteurianusStreptococcus phage PhiSpn 200Streptococcus pneumoniaeStreptococcus pseudopneumoniaeStreptococcus salivariusStreptococcus salivarius JIM8777Streptococcus sanguinisStreptococcus sobrinusStreptococcus sp.Streptococcus sp. A12Streptococcus sp. CNU G3Streptococcus sp. HMSC034E03Streptococcus sp. HMSC067H01Streptococcus sp. HSISM1Streptococcus sp. oral clone ASCB04Streptococcus sp. oral taxon 057Streptococcus sp. oral taxon 064Streptococcus sp. oral taxon 070Streptococcus suisStreptococcus thermophilusStreptococcus troglodytaeStreptococcus uberisStreptococcus vestibularisStreptomycesStreptomyces auratusStreptomyces coelicolorStreptomyces paraguayensisStreptomyces purpurascensStreptomycetaceaeStreptophytaSubdoligranulumSubdoligranulum sp.Subdoligranulum sp. 4 3 54A2FAASubdoligranulum variabileSuccinatimonasSuccinivibrioSuccinivibrio dextrinosolvensSuccinivibrio sp.SuccinivibrionaceaeSuicoccus acidiformansSulfuricellaSulfurihydrogenibiumSulfurihydrogenibium sp. YO3AOP1SuperficieibacterSutterellaSutterella parvirubraSutterella stercoricanisSutterella wadsworthensisSutterellaceaeSynechococcusSynergistaceaeSynergistalesSynergistesSynergistetesSynergistiaSyntrophobacteraceaeSyntrophobotulusSyntrophobotulus glycolicusSyntrophococcusSyntrophomonadaceaeSyntrophusSyntrophus aciditrophicusTM7 phylum sp. oral taxon 346TM7 phylum sp. oral taxon 349TM7 phylum sp. oral taxon 352TannerellaTannerella forsythiaTannerella serpentiformisTannerella sp.Tannerella sp. oral taxon 808TannerellaceaeTatumellaTenericutesTenericutes bacteriumTepidimicrobiumTepidimonasTepidiphilusTerrahaemophilusTerrahaemophilus aromaticivoransTerrisporobacterTerrisporobacter glycolicusTersicoccusTessaracoccusTetragenococcusTetrasphaeraThalassospiraThaueraThaumarchaeotaThermaceaeThermanaerovibrio acidaminovoransThermicanusThermincolaThermoactinomycesThermoactinomycetaceaeThermoanaerobacterThermoanaerobacteraceaeThermoanaerobacterales Family III. Incertae SedisThermoanaerobacteriumThermoanaerobacterium sp. RBIITDThermococcus gammatoleransThermoflavimicrobiumThermogemmatisporaceaeThermoleophiliaThermoleophilumThermomicrobium roseumThermomonasThermoproteaceaeThermoprotealesThermosinusThermotogaeThermusThiohalorhabdusThioplocaThioploca ingricaTilletiopsisTissierellaceaeTissierellalesTissierelliaTolypothrixTorulaspora delbrueckiiTrabulsiellaTractidigestivibacterTreponemaTreponema amylovorumTreponema brennaborenseTreponema brennaborense DSM 12168Treponema denticolaTreponema lecithinolyticumTreponema maltophilumTreponema mediumTreponema pallidumTreponema phagedenisTreponema putidumTreponema sp.Treponema sp. oral taxon 238Treponema sp. oral taxon 258Treponema sp. oral taxon 270Treponema vincentiiTrichinella pseudospiralisTrichophyton rubrumTrichormus variabilisTropherymaTropheryma whippleiTrueperellaTsukamurellaTumebacillusTuricibacterTuricibacter sanguinisTuricibacteraceaeTuricimonasTyzzerellaTyzzerella nexilisUdeniomycesUreaplasmaUreaplasma parvumUreaplasma urealyticumVagococcusVagococcus teuberiVampirovibrioVaribaculumVaribaculum anthropiVaribaculum cambrienseVariovoraxVariovorax boronicumulansVariovorax paradoxusVariovorax sp. PBL-H6Variovorax sp. PMC12VeillonellaVeillonella atypicaVeillonella denticariosiVeillonella disparVeillonella infantiumVeillonella montpellierensisVeillonella parvulaVeillonella rogosaeVeillonella sp.Veillonella sp. T11011-6VeillonellaceaeVeillonellalesVerrucomicrobiaVerrucomicrobiaceaeVerrucomicrobiaeVerrucomicrobialesVerrucomicrobiumVerrucosisporaVibrioVibrio anguillarumVibrio campbelliiVibrio choleraeVibrio mimicusVibrionaceaeVibrionalesVictivallaceaeVictivallalesVictivallisVirgibacillus necropolisVishniacozymaVogesellaWallemiaWautersiellaWeeksellaWeeksellaceaeWeissellaWeissella confusaWeissella koreensisWeizmanniaWeizmannia coagulansWenyingzhuangia fucanilyticaWilliamsiaWinkiaWinkia neuii subsp. anitrataWolbachiaWolinellaXanthobacteraceaeXanthomonadaceaeXanthomonadalesXanthomonasXenorhabdus nematophilaXylanimonasXylodonYersiniaYersinia enterocoliticaYersinia intermediaYersinia pestisYersiniaceaeYokenellaZoogloeaZymomonas[Clostridium] cellulosi[Clostridium] colinum[Clostridium] hylemonae[Clostridium] innocuum[Clostridium] leptum[Clostridium] scindens[Clostridium] spiroforme[Clostridium] sporosphaeroides[Clostridium] symbiosum[Clostridium] viride[Eubacterium] brachy[Eubacterium] eligens ATCC 27750[Eubacterium] infirmum[Eubacterium] nodatum[Eubacterium] rectale[Eubacterium] saphenum[Eubacterium] siraeum[Eubacterium] sulci[Ruminococcus] gnavus[Ruminococcus] gnavus CAG:126[Ruminococcus] lactaris[Ruminococcus] lactaris ATCC 29176[Ruminococcus] torques[Ruminococcus] torques CAG:61bacteriumbacterium Ellin6075candidate division SR1 bacteriumcandidate division TM7 genomosp. GTL1candidate phylum NAG2environmental samplesrumen bacterium NK4A214unclassified Acidaminococcaceaeunclassified Acidaminococcusunclassified Acinetobacterunclassified Actinobacteriaunclassified Actinomycesunclassified Actinomycetalesunclassified Aerococcaceaeunclassified Alistipesunclassified Alphaproteobacteriaunclassified Anaerobutyricumunclassified Anaerostipesunclassified Angelakisellaunclassified Bacillaceaeunclassified Bacilliunclassified Bacteriaunclassified Bacteroidalesunclassified Bacteroidesunclassified Bacteroidetesunclassified Bifidobacteriaceae (miscellaneous)unclassified Bilophilaunclassified Bradyrhizobiaceaeunclassified Burkholderiaceaeunclassified Burkholderialesunclassified Butyricicoccusunclassified Butyricimonasunclassified Campylobacteralesunclassified Candidatus Absconditabacteriaunclassified Candidatus Izimaplasmaunclassified Caproiciproducensunclassified Christensenellaceaeunclassified Clostridiaunclassified Clostridiaceaeunclassified Clostridiales Family XVII. Incertae Sedisunclassified Clostridiumunclassified Collinsellaunclassified Comamonadaceaeunclassified Coprobacillusunclassified Coprococcusunclassified Coriobacteriaceaeunclassified Coriobacteriiaunclassified Corynebacteriaceaeunclassified Corynebacterialesunclassified Delftiaunclassified Deltaproteobacteriaunclassified Dermabacteraceaeunclassified Desulfovibriounclassified Eggerthellaunclassified Enterobacterunclassified Enterobacteriaceaeunclassified Enterococcaceaeunclassified Epsilonproteobacteriaunclassified Erysipelotrichaceaeunclassified Erysipelotrichalesunclassified Erysipelotrichiaunclassified Escherichiaunclassified Eubacteriaceaeunclassified Eubacterialesunclassified Facklamiaunclassified Faecalibacteriumunclassified Fenollariaunclassified Firmicutes sensu strictounclassified Flavobacteriaceaeunclassified Fonticellaunclassified Fusobacteriaceaeunclassified Fusobacterialesunclassified Fusobacteriumunclassified Hungatellaunclassified Hyphomicrobialesunclassified Intrasporangiaceaeunclassified Klebsiellaunclassified Lachnospiraceaeunclassified Lactobacillaceaeunclassified Lactobacillalesunclassified Leptotrichiaceaeunclassified Megamonasunclassified Megasphaeraunclassified Microbacteriaceaeunclassified Microbacteriumunclassified Micrococcaceaeunclassified Micrococcalesunclassified Mogibacteriumunclassified Mollicutesunclassified Moraxellaceaeunclassified Mycoplasmataceaeunclassified Negativicutesunclassified Neisseriaceaeunclassified Neisserialesunclassified Nocardiaceaeunclassified Olsenellaunclassified Oscillospiraceaeunclassified Paenibacillusunclassified Parabacteroidesunclassified Parasutterellaunclassified Pasteurellaceaeunclassified Peptoniphilaceaeunclassified Peptostreptococcaceaeunclassified Phascolarctobacteriumunclassified Porphyromonadaceaeunclassified Prevotellaceaeunclassified Propionibacteriaceaeunclassified Proteusunclassified Pseudomonadaceaeunclassified Pseudomonasunclassified Puniceicoccaceaeunclassified Ralstoniaunclassified Rhodobacteraceaeunclassified Rikenellaceaeunclassified Ruminiclostridiumunclassified Ruminococcusunclassified Saccharofermentansunclassified Sphingobacteriiaunclassified Sphingomonadaceaeunclassified Stenotrophomonasunclassified Streptococcaceaeunclassified Streptophytaunclassified Subdoligranulumunclassified Sutterellaunclassified Sutterellaceaeunclassified Tenericutesunclassified Tissierelliaunclassified Tyzzerellaunclassified Vagococcusunclassified Veillonellaunclassified Veillonellaceaeunclassified Xanthomonadaceaeuncultured Bacteroidales bacteriumuncultured Bacteroidetes bacteriumuncultured Bifidobacterium sp.uncultured Bilophila sp.uncultured Candidatus Saccharimonas sp.uncultured Clostridia bacteriumuncultured Coprococcus sp.uncultured Erysipelotrichaceae bacteriumuncultured Eubacteriales bacteriumuncultured Eubacterium sp.uncultured Gracilibacter sp.uncultured Haematobacter sp.uncultured Lachnospiraceae bacteriumuncultured Oscillibacter sp.uncultured Oscillospira sp.uncultured Oscillospiraceae bacteriumuncultured Prevotella sp.uncultured Roseburia sp.uncultured Ruminiclostridium sp.uncultured Selenomonas sp.uncultured Variovorax sp.uncultured bacteriumuncultured bacterium BAC10G6uncultured phototrophic eukaryoteuncultured prokaryoteunidentified Actinomycete OPB41

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