Main Page

BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Slack team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.

About this project

119059Featured Taxon

unclassified Oxalobacteraceae(no rank)

cellular organismsBacteriaPseudomonadotaBetaproteobacteriaBurkholderialesOxalobacteraceae

BugSigDB Statistics

• Number of studies: 3 (filter)
• Number of signatures: 3
• Number of direct descendants: 0

Study by nameFeatured Studies

Differential Microbial Signature Associated With Benign Prostatic Hyperplasia and Prostate Cancer
Frontiers in cellular and infection microbiology, 2022 | Prostate gland | Prostate carcinoma | India

Differential intestinal and oral microbiota features associated with gestational diabetes and maternal inflammation
American journal of physiology. Endocrinology and metabolism, 2020 | Feces, Saliva | Gestational diabetes | China

Taxa

Filter signatures

Fuzzy | Parameterized | Logical operators » ExampleAdvanced Search

Statistics

• 1181 studies
• 5610 signatures
• 1467 unique taxa
• 31 host species
• 80 locations
• 165 body sites
• 414 conditions
• contributed by 172 contributors

Browse all studies by Host species | Body site | Condition | Taxa | Location of subjects.

Top 5 Contributors in the last 30 days

Last 30 days (Top 5)

Rank Score Pages Changes Username 1 154 151 153 Svetlana up 2 122 105 177 Rahila 3 90 75 135 Aleru Divine 4 72 42 274 Tosin 5 71 50 159 KateRasheed

Extended Statistics