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BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Slack team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.

About this project

NCBI.png 2813951Featured Taxon
BugSigDB Statistics
  • Number of studies: 1 (filter)
  • Number of signatures: 2
  • Number of direct descendants: 0
Study by nameFeatured Studies
Gut microbiota: effect of pubertal status
BMC microbiology, 2020 | Feces | Puberty | China

Taxa

Fuzzy | Parameterized | Logical operators ยป ExampleAdvanced Search
Statistics
  • 1082 studies
  • 5160 signatures
  • 2209 unique taxa
  • 30 host species
  • 68 locations
  • 117 body sites
  • 292 conditions
  • contributed by 96 contributors
Top 5 Contributors in the last 30 days

Last 30 days (Top 5)