The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- United Kingdom
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Treatment outcome measurement Treatment outcome measurement,treatment outcome measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy participants at Baseline
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Healthy participants following high dose of Psyllium supplementation
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Participants were given 7-14g of Psyllium per day for 7days
- Group 0 sample size Number of subjects in the control (unexposed) group
- 8
- Group 1 sample size Number of subjects in the case (exposed) group
- 8
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 1 Month
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4-V5
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- raw counts
- Statistical test
- Negative Binomial Regression
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.1
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Source: Figure 2
Description: Taxonomic differences of fecal microbiota in Healthy Adults
Abundance in Group 1: increased abundance in Healthy participants following high dose of Psyllium supplementation
NCBI | Quality Control | Links |
---|---|---|
Veillonella |
Revision editor(s): Ese
Signature 2
Source: Figure 2
Description: Taxonomic differences of fecal microbiota in Healthy Adults
Abundance in Group 1: decreased abundance in Healthy participants following high dose of Psyllium supplementation
NCBI | Quality Control | Links |
---|---|---|
Subdoligranulum |
Revision editor(s): Ese
Experiment 2
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Constipated Patients at baseline
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Constipated participants following Psyllium supplementation
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Constipated participants were given 21g of Psyllium per day for 7days
- Group 0 sample size Number of subjects in the control (unexposed) group
- 16
- Group 1 sample size Number of subjects in the case (exposed) group
- 16
Lab analysis
Statistical Analysis
Signature 1
Source: Table 3
Description: Taxonomic differences of fecal microbiota in constipated participants
Abundance in Group 1: increased abundance in Constipated participants following Psyllium supplementation
NCBI | Quality Control | Links |
---|---|---|
Faecalibacterium | ||
Lachnospira | ||
Phascolarctobacterium | ||
Sutterella | ||
Veillonella |
Revision editor(s): Ese
Signature 2
Source: Table 3
Description: Taxonomic differences of fecal microbiota in constipated participants
Abundance in Group 1: decreased abundance in Constipated participants following Psyllium supplementation
NCBI | Quality Control | Links |
---|---|---|
Christensenella sp. | ||
uncultured Coriobacterium sp. |
Revision editor(s): Ese
Experiment 3
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Constipation Constipation,Costiveness,Dyschezia,constipation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy participants at Baseline
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Constipated participants at Baseline
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Differences in fecal microbiota of Healthy and Constipated participants at Baseline
- Group 0 sample size Number of subjects in the control (unexposed) group
- 8
Lab analysis
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Mann-Whitney (Wilcoxon)
Signature 1
Source: Table 2
Description: Taxonomic differences of fecal microbiota in Constipated patients and Healthy patients
Abundance in Group 1: increased abundance in Constipated participants at Baseline
NCBI | Quality Control | Links |
---|---|---|
Actinomyces | ||
Adlercreutzia | ||
Christensenella sp. | ||
Clostridia incertae sedis | ||
Desulfovibrio | ||
Erysipelotrichaceae incertae sedis | ||
Rhodococcus | ||
uncultured Coriobacterium sp. |
Revision editor(s): Ese
Signature 2
Source: Table 2
Description: Taxonomic differences of fecal microbiota in Constipated patients and Healthy patients
Abundance in Group 1: decreased abundance in Constipated participants at Baseline
NCBI | Quality Control | Links |
---|---|---|
Lachnospira | ||
SuterellaSuterella |
Revision editor(s): Ese