High-Fat Diet Enhances the Liver Metastasis Potential of Colorectal Cancer through Microbiota Dysbiosis
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Rattus norvegicus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- High fat diet HF - High fat diet,High fat diet (finding),High fat diet,high fat diet
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy controls
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- High fat diet
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This refers to adult male Wistar rats and adult male BALB/c mice; who were fed with high fat diet.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 7
- Group 1 sample size Number of subjects in the case (exposed) group
- 7
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- T-Test
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Source: Figure 4C, 4D, 4E, 5G
Description: Comparison of fecal bacterial composition at the phylum and genus levels between rats subjected to eight weeks of high-fat diet treatment and healthy controls.
Abundance in Group 1: increased abundance in High fat diet
Revision editor(s): ShadeAkinremi, KateRasheed
Signature 2
Source: Figure 4E
Description: Comparison of fecal bacterial composition at the phylum and genus levels between rats subjected to eight weeks of high-fat diet treatment and healthy controls.
Abundance in Group 1: decreased abundance in High fat diet
NCBI | Quality Control | Links |
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Prevotella | ||
unclassified Veillonellaceae | ||
Anaerotruncus |
Revision editor(s): ShadeAkinremi
Experiment 2
Subjects
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Metastatic colorectal cancer Metastatic colorectal cancer,metastatic colorectal cancer
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- non-metastatic group of colorectal cancer
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- metastatic group of colorectal cancer
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Colorectal cancer patients with liver metastases.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 10
- Group 1 sample size Number of subjects in the case (exposed) group
- 13
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 1 month
Lab analysis
Statistical Analysis
Signature 1
Source: Figure 5C
Description: Comparison of fecal bacterial composition at the phylum and genus levels between colorectal cancer patients with and without liver metastases.
Abundance in Group 1: increased abundance in metastatic group of colorectal cancer
NCBI | Quality Control | Links |
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Barnesiella | ||
Desulfovibrio | ||
Gemmiger | ||
Ruminococcus |
Revision editor(s): ShadeAkinremi