Characteristics of the Gut Microbiota in Japanese Patients with Premenstrual Syndrome/Experiment 1
From BugSigDB
Needs review
Subjects
- Location of subjects
- Japan
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Menstrual disorder Menstrual disorder,menstrual disorder
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Control group
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Premenstrual syndrome (PMS) group
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Participants who passed the criteria for premenstrual syndrome (PMS),
- Group 0 sample size Number of subjects in the control (unexposed) group
- 144
- Group 1 sample size Number of subjects in the case (exposed) group
- 24
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 1 week
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V1-V3
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- centered log-ratio
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment
- age
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
- Richness Number of species
- increased
Signature 1
Needs review
Source: Figure 4
Description: Significant differences in the gut microbial abundance at the genus level between the PMS and control groups.
Abundance in Group 1: increased abundance in Premenstrual syndrome (PMS) group
Revision editor(s): Aleru Divine
Signature 2
Needs review
Source: Figure 4
Description: Significant differences in the gut microbial abundance at the genus level between the PMS and control groups.
Abundance in Group 1: decreased abundance in Premenstrual syndrome (PMS) group
| NCBI | Quality Control | Links |
|---|---|---|
| Dialister | ||
| Oscillibacter |
Revision editor(s): Aleru Divine
