Short-chain fatty acid-butyric acid ameliorates granulosa cells inflammation through regulating METTL3-mediated N6-methyladenosine modification of FOSL2 in polycystic ovarian syndrome
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Polycystic ovary syndrome Cystic disease of ovaries,hyperandrogenemia,Multicystic ovaries,multicystic ovaries,Ovarian Degeneration, Sclerocystic,Ovarian Syndrome, Polycystic,Ovarian Syndromes, Polycystic,Ovaries, Sclerocystic,Ovary Syndrome, Polycystic,Ovary, Sclerocystic,PCO - Polycystic ovaries,Pco1,PCOD - Polycystic ovarian disease,PCOS,Pcos,PCOS - Polycystic ovarian syndrome,PCOS1,Polycystic ovarian disease,polycystic ovarian disease,Polycystic ovarian syndrome,Polycystic ovaries,polycystic ovaries,Polycystic ovaries (disorder),polycystic ovary,polycystic ovary syndrome,polycystic ovary syndrome 1,Sclerocystic Ovarian Degeneration,Sclerocystic Ovaries,Sclerocystic Ovary,Sclerocystic Ovary Syndrome,Stein Leventhal Syndrome,Stein-Leventhal synd.,Stein-Leventhal Syndrome,Stein-Leventhal syndrome,Syndrome, Polycystic Ovary,Syndrome, Stein-Leventhal,Polycystic ovary syndrome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Control + Hyperandrogenism group (HA)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Obese group (FAT)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- The mere obese patients with polycystic ovary syndrome
- Group 0 sample size Number of subjects in the control (unexposed) group
- 12
- Group 1 sample size Number of subjects in the case (exposed) group
- 6
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2
Signature 1
Source: Figure 2B
Description: Linear discriminant analysis (LDA) discriminant histogram of gut microbiota in three groups. Identification of the bacterial taxa with statistically significant difference between groups using LEfSe software and LDA. Taxa enriched in Control, FAT-PCOS, and HA-PCOS group are colored by red, green, and blue respectively (LDA > 2.0 and P < 0.05), the relative abundance of thesebiomarkers are shown in the histogram (mean and standard deviation values are plotted) under the corresponding cladogram.
Abundance in Group 1: increased abundance in Obese group (FAT)
NCBI | Quality Control | Links |
---|---|---|
Achromobacter | ||
Fusobacterium | ||
Rhizobacter | ||
Streptococcus |
Revision editor(s): Shulamite
Experiment 2
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Control + Mere obese group (FAT)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Hyperandrogenism group (HA)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- The mere Hyperandrogenism group with polycystic ovary syndrome
Lab analysis
Statistical Analysis
Signature 1
Source: 2B
Description: Linear discriminant analysis (LDA) discriminant histogram of gut microbiota in three groups. Identification of the bacterial taxa with statistically significant difference between groups using LEfSe software and LDA. Taxa enriched in Control, FAT-PCOS, and HA-PCOS group are colored by red, green, and blue respectively (LDA > 2.0 and P < 0.05), the relative abundance of thesebiomarkers are shown in the histogram (mean and standard deviation values are plotted) under the corresponding cladogram.
Abundance in Group 1: increased abundance in Hyperandrogenism group (HA)
NCBI | Quality Control | Links |
---|---|---|
Clostridium | ||
Romboutsia |
Revision editor(s): Shulamite
Experiment 3
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Mere obese group (FAT )+ Mere hyperandrogenism group (HA)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Control
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Male infertility patients or patients receiving IVF treatment for tubal factors in the control group.
Lab analysis
Statistical Analysis
Signature 1
Source: 2B
Description: Linear discriminant analysis (LDA) discriminant histogram of gut microbiota in three groups. Identification of the bacterial taxa with statistically significant difference between groups using LEfSe software and LDA. Taxa enriched in Control, FAT-PCOS, and HA-PCOS group are colored by red, green, and blue respectively (LDA > 2.0 and P < 0.05), the relative abundance of thesebiomarkers are shown in the histogram (mean and standard deviation values are plotted) under the corresponding cladogram.
Abundance in Group 1: increased abundance in Control
NCBI | Quality Control | Links |
---|---|---|
Enterobacter | ||
Klebsiella | ||
Eubacterium | ||
Citrobacter | ||
Megamonas |
Revision editor(s): Shulamite