Suppression of MyD88 disturbs gut microbiota and activates the NLR pathway and hence fails to ameliorate DSS-induced colitis/Experiment 5
From BugSigDB
Needs review
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Mus musculus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Treatment outcome measurement Treatment outcome measurement,treatment outcome measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Combination of H20 + PBS ( water + Phosphate buffer saline), DSS + PBS (Dextran sodium sulfate + Phosphate buffer saline) + H20 + TJ5 (water + MyD88 inhibitor) groups
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- DSS + TJ5 (Dextran sodium sulfate + MyD88 inhibitor) group
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- A treatment group that received DSS (Dextran sodium sulfate) and TJ5 (MyD88 inhibitor)
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2.5
Signature 1
Needs review
Source: Supplementary Figure 3
Description: Significant changes in functional profiles were suggested based on phylogenetic investigations of communities through Lefse analysis.
Abundance in Group 1: increased abundance in DSS + TJ5 (Dextran sodium sulfate + MyD88 inhibitor) group
| NCBI | Quality Control | Links |
|---|---|---|
| Pseudomonadota | ||
| Gammaproteobacteria | ||
| Enterococcaceae |
Revision editor(s): PreciousChijioke
