Effects of inulin on intestinal flora and metabolism-related indicators in obese polycystic ovary syndrome patients
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Polycystic ovary syndrome Cystic disease of ovaries,hyperandrogenemia,Multicystic ovaries,multicystic ovaries,Ovarian Degeneration, Sclerocystic,Ovarian Syndrome, Polycystic,Ovarian Syndromes, Polycystic,Ovaries, Sclerocystic,Ovary Syndrome, Polycystic,Ovary, Sclerocystic,PCO - Polycystic ovaries,Pco1,PCOD - Polycystic ovarian disease,PCOS,Pcos,PCOS - Polycystic ovarian syndrome,PCOS1,Polycystic ovarian disease,polycystic ovarian disease,Polycystic ovarian syndrome,Polycystic ovaries,polycystic ovaries,Polycystic ovaries (disorder),polycystic ovary,polycystic ovary syndrome,polycystic ovary syndrome 1,Sclerocystic Ovarian Degeneration,Sclerocystic Ovaries,Sclerocystic Ovary,Sclerocystic Ovary Syndrome,Stein Leventhal Syndrome,Stein-Leventhal synd.,Stein-Leventhal Syndrome,Stein-Leventhal syndrome,Syndrome, Polycystic Ovary,Syndrome, Stein-Leventhal,Polycystic ovary syndrome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Non-obese control group (NSD)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Obese control group (NFD)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group consists of obese patients with ≥ 25 kg/m2 body mass index (BMI).
- Group 0 sample size Number of subjects in the control (unexposed) group
- 20
- Group 1 sample size Number of subjects in the case (exposed) group
- 16
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 3 months
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Ion Torrent
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2
Signature 1
Source: Figure 3E
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: increased abundance in Obese control group (NFD)
NCBI | Quality Control | Links |
---|---|---|
Allisonella | ||
Parabacteroides distasonis | ||
Howardella | ||
[Ruminococcus] torques | ||
Actinomyces massiliensis | ||
TM7 phylum sp. oral clone FR058 | ||
Megamonas |
Revision editor(s): Victoria
Signature 2
Source: Figure 3E
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: decreased abundance in Obese control group (NFD)
NCBI | Quality Control | Links |
---|---|---|
Phocaeicola plebeius | ||
unclassified Oscillospiraceae | ||
Coprococcus eutactus |
Revision editor(s): Victoria
Experiment 2
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Obese control group (NFD)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Obese Polycystic Ovary Syndrome patients (FDB)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group consists of obese patients with ≥ 25 kg/m2 body mass index (BMI) who have polycystic ovary syndrome (PCOS).
- Group 0 sample size Number of subjects in the control (unexposed) group
- 16
- Group 1 sample size Number of subjects in the case (exposed) group
- 19
Lab analysis
Statistical Analysis
Signature 1
Source: Figure 3F
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: increased abundance in Obese Polycystic Ovary Syndrome patients (FDB)
NCBI | Quality Control | Links |
---|---|---|
Mediterraneibacter gnavus | ||
Lactococcus | ||
Prevotella corporis | ||
Methylobacterium | ||
Beijerinckiaceae | ||
Phocaeicola plebeius |
Revision editor(s): Victoria
Signature 2
Source: Figure 3F
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: decreased abundance in Obese Polycystic Ovary Syndrome patients (FDB)
NCBI | Quality Control | Links |
---|---|---|
Ligilactobacillus ruminis | ||
Alloprevotella | ||
bacterium LD2013 | ||
Clostridium sp. MC 40 | ||
Holdemanella | ||
Bacteroides eggerthii |
Revision editor(s): Victoria
Experiment 3
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Obese Polycystic Ovary Syndrome patients (FDB) before inulin intervention
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Obese Polycystic Ovary Syndrome patients (FDA) after inulin intervention
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group consists of obese patients with ≥ 25 kg/m2 body mass index (BMI) who have polycystic ovary syndrome (PCOS) after 3 months of inulin intervention.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 19
- Group 1 sample size Number of subjects in the case (exposed) group
- 13
Lab analysis
Statistical Analysis
Signature 1
Source: Figure 3G
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: increased abundance in Obese Polycystic Ovary Syndrome patients (FDA) after inulin intervention
NCBI | Quality Control | Links |
---|---|---|
Lachnospira |
Revision editor(s): Victoria
Signature 2
Source: Figure 3G
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: decreased abundance in Obese Polycystic Ovary Syndrome patients (FDA) after inulin intervention
NCBI | Quality Control | Links |
---|---|---|
Sutterella | ||
Lactobacillaceae | ||
Lactobacillus | ||
Lactococcus | ||
Enterobacter | ||
Rhodospirillales | ||
Lactococcus lactis |
Revision editor(s): Victoria
Experiment 4
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Obese control group (NFD)
- Group 0 sample size Number of subjects in the control (unexposed) group
- 16
Lab analysis
Statistical Analysis
Signature 1
Source: Figure 3H
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: increased abundance in Obese Polycystic Ovary Syndrome patients (FDA) after inulin intervention
Revision editor(s): Victoria
Signature 2
Source: Figure 3H
Description: Analysis of Biomarkers with significant differences between groups based on LDA Effect Size.
Abundance in Group 1: decreased abundance in Obese Polycystic Ovary Syndrome patients (FDA) after inulin intervention
NCBI | Quality Control | Links |
---|---|---|
[Ruminococcus] torques | ||
Bacteroides cellulosilyticus | ||
Acidaminococcaceae | ||
Christensenellaceae | ||
Megasphaera | ||
Ruminococcus bicirculans (ex Liu et al. 2021) |
Revision editor(s): Victoria