Impact of psychostimulants on microbiota and short-chain fatty acids alterations in children with attention-deficit/hyperactivity disorder
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 6
Subjects
- Location of subjects
- Thailand
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Treatment outcome measurement Treatment outcome measurement,treatment outcome measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy controls
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unmedicated Attention-deficit hyperactivity disorder (ADHD)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group consists of children aged 6–12 years diagnosed with ADHD who have not received psychostimulant medication for their condition.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 10
- Group 1 sample size Number of subjects in the case (exposed) group
- 10
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 2 weeks
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- log transformation
- Statistical test
- ANCOM-BC
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- Matched on Factors on which subjects have been matched on in a case-control study
- age, sex
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Richness Number of species
- unchanged
- Faith Phylogenetic diversity, takes into account phylogenetic distance of all taxa identified in a sample
- increased
Signature 1
Source: Fig. 2
Description: Differential abundance of gut microbiota among healthy controls and children with unmedicated ADHD.
Abundance in Group 1: increased abundance in Unmedicated Attention-deficit hyperactivity disorder (ADHD)
Revision editor(s): Joiejoie
Signature 2
Source: Fig. 2
Description: Differential abundance of gut microbiota among healthy controls and children with unmedicated ADHD.
Abundance in Group 1: decreased abundance in Unmedicated Attention-deficit hyperactivity disorder (ADHD)
Revision editor(s): Joiejoie, KateRasheed
Experiment 7
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unmedicated ADHD
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Medicated ADHD (ADHD + MPH)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group consists of children aged 6–12 years diagnosed with ADHD who are undergoing treatment with medication
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Shannon Estimator of species richness and species evenness: more weight on species richness
- decreased
- Richness Number of species
- unchanged
- Faith Phylogenetic diversity, takes into account phylogenetic distance of all taxa identified in a sample
- decreased
Signature 1
Source: Fig. 2
Description: Differential abundance of gut microbiota among medicated ADHD and children with unmedicated ADHD.
Abundance in Group 1: increased abundance in Medicated ADHD (ADHD + MPH)
NCBI | Quality Control | Links |
---|---|---|
Kitasatosporales | ||
Streptomycetaceae | ||
Anaerostipes |
Revision editor(s): Joiejoie
Signature 2
Source: Fig. 2
Description: Differential abundance of gut microbiota among medicated ADHD and children with unmedicated ADHD.
Abundance in Group 1: decreased abundance in Medicated ADHD (ADHD + MPH)
Revision editor(s): Joiejoie
Experiment 8
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy controls
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Richness Number of species
- unchanged
- Faith Phylogenetic diversity, takes into account phylogenetic distance of all taxa identified in a sample
- unchanged
Signature 1
Source: Fig. 2
Description: Differential abundance of gut microbiota among healthy controls and children with medicated ADHD
Abundance in Group 1: increased abundance in Medicated ADHD (ADHD + MPH)
NCBI | Quality Control | Links |
---|---|---|
Parvimonas |
Revision editor(s): Joiejoie