Maternal balanced energy-protein supplementation reshapes the maternal gut microbiome and enhances carbohydrate metabolism in infants: a randomized controlled trial/Experiment 4
From BugSigDB
Subjects
- Location of subjects
- Burkina Faso
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Balanced reciprocal translocation Balanced reciprocal translocation,balanced reciprocal translocation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Mother-Tri3 Control
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Mother-Tri3 Intervention
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group refers to mothers whose stool microbiome samples were collected in the intervention group during the third trimester of pregnancy.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 78
- Group 1 sample size Number of subjects in the case (exposed) group
- 71
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- log transformation
- Statistical test
- ANCOM-BC2
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
- Richness Number of species
- increased
Signature 1
Source: Fig. 5A
Description: Differentially abundant taxa associated with the intervention at the third trimester (Tri3)
Abundance in Group 1: increased abundance in Mother-Tri3 Intervention
| NCBI | Quality Control | Links |
|---|---|---|
| UMGS882 sp.UMGS882 sp. | ||
| UBA1436 sp.UBA1436 sp. | ||
| Lachnospiraceae sp.Lachnospiraceae sp. |
Revision editor(s): Joiejoie
Signature 2
Source: Fig. 5A
Description: Differentially abundant taxa associated with the intervention at the third trimester (Tri3)
Abundance in Group 1: decreased abundance in Mother-Tri3 Intervention
| NCBI | Quality Control | Links |
|---|---|---|
| CAG 245 sp. 000434196CAG 245 sp. 000434196 |
Revision editor(s): Joiejoie
