Gut microbiome in patients with early-stage and late-stage endometriosis/Experiment 8
From BugSigDB
Reviewed Marked as Reviewed by KateRasheed on 2025-4-29
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Dysmenorrhea Painful menstruation,Dysmenorrhea,dysmenorrhea
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Early-stage-F
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Late-stage-F
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- This group refers to patients without dysmenorrhea who are diagnosed with late-stage endometriosis, as examined for gut microbiota differences.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 23
- Group 1 sample size Number of subjects in the case (exposed) group
- 19
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 6 months
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- ANOVA
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Reviewed Marked as Reviewed by KateRasheed on 2025-4-29
Source: Fig. 6D
Description: Relative abundance levels of 10 differential species consistently enriched between early-stage and late-stage groups.
Abundance in Group 1: increased abundance in Late-stage-F
| NCBI | Quality Control | Links |
|---|---|---|
| Bombella | ||
| Commensalibacter | ||
| Snodgrassella | ||
| uncultured Hyphomicrobiales bacterium |
Revision editor(s): Joiejoie, KateRasheed
Signature 2
Reviewed Marked as Reviewed by KateRasheed on 2025-4-29
Source: Fig. 6D
Description: Relative abundance levels of 10 differential species consistently enriched between early-stage and late-stage groups
Abundance in Group 1: decreased abundance in Late-stage-F
| NCBI | Quality Control | Links |
|---|---|---|
| Bacteroides caecimuris | ||
| Xylanibacter ruminicola | ||
| Bacteroidales RF16 groupBacteroidales RF16 group | ||
| uncultured rumen bacterium |
Revision editor(s): Joiejoie, KateRasheed
