Alteration in Oral Microbiome Among Men Who Have Sex With Men With Acute and Chronic HIV Infection on Antiretroviral Therapy/Experiment 9
From BugSigDB
Reviewed Marked as Reviewed by Svetlana up on 2024-10-9
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Throat Gula,Throat,throat
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Human immunodeficiency virus AIDS virus,HIV,Human immunodeficiency virus,human immunodeficiency virus
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Uninfected Controls
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- CD4+ T cells < 200 cells/mm3
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Subjects whose CD4+ T cells were defined as < 200 cells/mm3.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 15
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 4 weeks
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4-V5
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- raw counts
- Statistical test
- T-Test
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
Signature 1
Reviewed Marked as Reviewed by Svetlana up on 2024-10-9
Source: Figure 5
Description: The relationship between the alteration observed in the oral microbiome and the CD4+ T-cell count of patients.
Abundance in Group 1: decreased abundance in CD4+ T cells < 200 cells/mm3
| NCBI | Quality Control | Links |
|---|---|---|
| Haemophilus | ||
| Actinomyces | ||
| Rothia | ||
| unclassified Oscillospiraceae |
Revision editor(s): Aleru Divine
