Standard Sample Storage Conditions Have an Impact on Inferred Microbiome Composition and Antimicrobial Resistance Patterns
-
Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- Denmark
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Sus scrofa domesticus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 0 hour
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of -80°C for 64 hours
- Group 0 sample size Number of subjects in the control (unexposed) group
- 1
- Group 1 sample size Number of subjects in the case (exposed) group
- 1
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- raw counts
- Statistical test
- DESeq2
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.01
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 2
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: text
Description: they were observed at higher abundances following storage at 22°C for 64 h
Abundance in Group 1: increased abundance in Spiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Actinomycetota | ||
| Bacillota |
Revision editor(s): Bolanle
Experiment 3
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 4
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 5
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of -80°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 6
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 samplespiked with a mock community and stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 7
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 8
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 9
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 10
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (-80°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 11
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 samplespiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 12
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 13
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 14
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 15
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 16
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-80°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 17
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 18
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 19
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 20
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 21
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 22
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 23
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 24
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 25
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 26
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 27
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 28
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 29
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 30
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 31
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 32
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 33
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Microbiome Microbiome,microbiome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 0 hour
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -80°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Prevotella (class Bacteroidia), the most abundant genus in pig feces, was more abundant for P1 frozen samples than in samples undergoing immediate DNA isolation, Phascolarctobacterium (class Negativicutes), also had higher abundance in stored samples than for samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 34
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Prevotella (class Bacteroidia), the most abundant genus in pig feces, was abundant for P1 frozen samples than in samples undergoing immediate DNA isolation, Phascolarctobacterium (class Negativicutes), also had higher abundance in stored samples than for samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 35
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Prevotella (class Bacteroidia), the most abundant genus in pig feces, was abundant for P1 frozen samples than in samples undergoing immediate DNA isolation, Phascolarctobacterium (class Negativicutes), also had higher abundance in stored samples than for samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 36
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 37
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description:
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description:
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 38
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 39
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 40
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 41
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 42
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Phascolarctobacterium | ||
| Roseburia | ||
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 43
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Phascolarctobacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 44
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 45
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 46
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 47
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed imm
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: lower abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 48
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 49
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 50
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 51
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 52
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 53
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: lower abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 54
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 55
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 56
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately.
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 57
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 58
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 59
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Not specified
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 samplespiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 60
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 61
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 62
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Microbiome Microbiome,microbiome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 63
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Not specified
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P1) at 16 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P1 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 64
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Microbiome Microbiome,microbiome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Bolanle
Experiment 65
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately.
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 66
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Phascolarctobacterium | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 67
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Bolanle
Experiment 68
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 69
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Bolanle
Experiment 70
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 71
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 72
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P1) at 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: higher abundance with increasing temperature and time was detected in samples processed immediately
Abundance in Group 1: increased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: There was lower abundance of the taxa in frozen samples than what was detected in samples processed immediately
Abundance in Group 1: decreased abundance in Unspiked pig feces(P1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Bolanle
Experiment 73
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Not specified
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 0 hour
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 74
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 75
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 76
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 77
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of -80°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 78
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 79
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 80
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 81
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 82
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (-80°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 83
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 84
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 85
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 86
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 87
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 88
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-80°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 89
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 90
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 91
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 92
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 93
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 94
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 95
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 96
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 97
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 98
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 99
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 100
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 101
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 102
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 103
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 104
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (-20°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 105
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 106
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 107
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (5°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 108
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Microbiome Microbiome,microbiome
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Spiked pig feces(P2) at 16 hours (22°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Spiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- P2 sample spiked with a mock community and stored at a temperature of 64 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 109
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 0 hour
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -80°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Phascolarctobacterium | ||
| Prevotella | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 110
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 111
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium |
Revision editor(s): Aleru Divine
Experiment 112
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 113
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 114
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 115
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 116
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 117
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 118
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 119
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 120
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 121
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 122
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 123
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 124
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium |
Revision editor(s): Aleru Divine
Experiment 125
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 126
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 127
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia | ||
| Treponema |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 128
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2.
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 129
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Treponema | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 130
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 131
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 132
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 133
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 134
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 135
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Experiment 136
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 137
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Treponema | ||
| Roseburia | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 138
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 139
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 140
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 141
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Experiment 142
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Treponema |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 143
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked pig feces(P2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked P2 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Phascolarctobacterium |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Faecalibacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Experiment 144
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked pig feces(P2) at 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: increased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Treponema | ||
| Phascolarctobacterium | ||
| Roseburia |
Revision editor(s): Aleru Divine
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked pig feces P2
Abundance in Group 1: decreased abundance in Unspiked pig feces(P2) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Faecalibacterium | ||
| Prevotella |
Revision editor(s): Aleru Divine
Experiment 145
Subjects
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Not specified
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Not specified
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 0 hours
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -80°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter | ||
| Parabacteroides |
Revision editor(s): Bolanle
Experiment 146
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Experiment 147
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Experiment 148
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Aeromonas | ||
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Parabacteroides | ||
| Acinetobacter |
Revision editor(s): Bolanle
Experiment 149
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter | ||
| Parabacteroides |
Revision editor(s): Bolanle
Experiment 150
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Parabacteroides | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter |
Revision editor(s): Bolanle
Experiment 151
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Parabacteroides | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter |
Revision editor(s): Bolanle
Experiment 152
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides |
Revision editor(s): Bolanle
Experiment 153
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -80°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description:
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (-80°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Experiment 154
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Parabacteroides | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Experiment 155
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides | ||
| Aeromonas |
Revision editor(s): Bolanle
Experiment 156
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Aeromonas |
Revision editor(s): Bolanle
Experiment 157
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Parabacteroides |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Experiment 158
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Aeromonas |
Revision editor(s): Bolanle
Experiment 159
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description:
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (22°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides |
Revision editor(s): Bolanle
Experiment 160
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description:
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides | ||
| Aeromonas |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description:
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Prevotella |
Revision editor(s): Bolanle
Experiment 161
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 64 hours (-20°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Aeromonas |
Revision editor(s): Bolanle
Experiment 162
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Signature 1
Source: Figure 4
Description: : Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: increased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Arcobacter | ||
| Acinetobacter | ||
| Parabacteroides | ||
| Prevotella |
Revision editor(s): Bolanle
Signature 2
Source: Figure 4
Description: Differential abundance of selected highly abundant bacteria between the storage conditions in unspiked sewage sample S1
Abundance in Group 1: decreased abundance in Unspiked sewage samples (S1) at 16 hours (5°C)
| NCBI | Quality Control | Links |
|---|---|---|
| Aeromonas |
Revision editor(s): Bolanle
Experiment 163
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 164
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 165
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 166
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of -20°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 167
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 168
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 169
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 170
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 171
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 172
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 173
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 174
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 175
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 5°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 176
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 177
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 178
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 16 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 179
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S1) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S1 sample stored at a temperature of 22°C for 64 hours
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 180
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S1) at 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 181
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 0 hour
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -80°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 182
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -80°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 183
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 184
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 185
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 186
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 187
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 188
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 189
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-80°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -80°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 190
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 191
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 192
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 193
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 194
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 195
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 196
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-80°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 197
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 198
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 199
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 200
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 201
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 202
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-20°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of -20°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 203
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 204
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 205
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 206
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 207
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (-20°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
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Experiment 208
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 210
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 211
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 5°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 212
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 213
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- unchanged
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Experiment 214
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (5°C)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 16 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
Experiment 215
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Unspiked sewage samples (S2) at 64 hours (22°C)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Unspiked S2 sample stored at a temperature of 22°C for 64 hours.
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Experiment 216
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unspiked sewage samples (S2) at 16 hours (22°C)
Lab analysis
Statistical Analysis
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- decreased
- Chao1 Abundance-based estimator of species richness
- decreased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- decreased
Contents
- 1 Experiment 1
- 2 Experiment 2
- 3 Experiment 3
- 4 Experiment 4
- 5 Experiment 5
- 6 Experiment 6
- 7 Experiment 7
- 8 Experiment 8
- 9 Experiment 9
- 10 Experiment 10
- 11 Experiment 11
- 12 Experiment 12
- 13 Experiment 13
- 14 Experiment 14
- 15 Experiment 15
- 16 Experiment 16
- 17 Experiment 17
- 18 Experiment 18
- 19 Experiment 19
- 20 Experiment 20
- 21 Experiment 21
- 22 Experiment 22
- 23 Experiment 23
- 24 Experiment 24
- 25 Experiment 25
- 26 Experiment 26
- 27 Experiment 27
- 28 Experiment 28
- 29 Experiment 29
- 30 Experiment 30
- 31 Experiment 31
- 32 Experiment 32
- 33 Experiment 33
- 34 Experiment 34
- 35 Experiment 35
- 36 Experiment 36
- 37 Experiment 37
- 38 Experiment 38
- 39 Experiment 39
- 40 Experiment 40
- 41 Experiment 41
- 42 Experiment 42
- 43 Experiment 43
- 44 Experiment 44
- 45 Experiment 45
- 46 Experiment 46
- 47 Experiment 47
- 48 Experiment 48
- 49 Experiment 49
- 50 Experiment 50
- 51 Experiment 51
- 52 Experiment 52
- 53 Experiment 53
- 54 Experiment 54
- 55 Experiment 55
- 56 Experiment 56
- 57 Experiment 57
- 58 Experiment 58
- 59 Experiment 59
- 60 Experiment 60
- 61 Experiment 61
- 62 Experiment 62
- 63 Experiment 63
- 64 Experiment 64
- 65 Experiment 65
- 66 Experiment 66
- 67 Experiment 67
- 68 Experiment 68
- 69 Experiment 69
- 70 Experiment 70
- 71 Experiment 71
- 72 Experiment 72
- 73 Experiment 73
- 74 Experiment 74
- 75 Experiment 75
- 76 Experiment 76
- 77 Experiment 77
- 78 Experiment 78
- 79 Experiment 79
- 80 Experiment 80
- 81 Experiment 81
- 82 Experiment 82
- 83 Experiment 83
- 84 Experiment 84
- 85 Experiment 85
- 86 Experiment 86
- 87 Experiment 87
- 88 Experiment 88
- 89 Experiment 89
- 90 Experiment 90
- 91 Experiment 91
- 92 Experiment 92
- 93 Experiment 93
- 94 Experiment 94
- 95 Experiment 95
- 96 Experiment 96
- 97 Experiment 97
- 98 Experiment 98
- 99 Experiment 99
- 100 Experiment 100
- 101 Experiment 101
- 102 Experiment 102
- 103 Experiment 103
- 104 Experiment 104
- 105 Experiment 105
- 106 Experiment 106
- 107 Experiment 107
- 108 Experiment 108
- 109 Experiment 109
- 110 Experiment 110
- 111 Experiment 111
- 112 Experiment 112
- 113 Experiment 113
- 114 Experiment 114
- 115 Experiment 115
- 116 Experiment 116
- 117 Experiment 117
- 118 Experiment 118
- 119 Experiment 119
- 120 Experiment 120
- 121 Experiment 121
- 122 Experiment 122
- 123 Experiment 123
- 124 Experiment 124
- 125 Experiment 125
- 126 Experiment 126
- 127 Experiment 127
- 128 Experiment 128
- 129 Experiment 129
- 130 Experiment 130
- 131 Experiment 131
- 132 Experiment 132
- 133 Experiment 133
- 134 Experiment 134
- 135 Experiment 135
- 136 Experiment 136
- 137 Experiment 137
- 138 Experiment 138
- 139 Experiment 139
- 140 Experiment 140
- 141 Experiment 141
- 142 Experiment 142
- 143 Experiment 143
- 144 Experiment 144
- 145 Experiment 145
- 146 Experiment 146
- 147 Experiment 147
- 148 Experiment 148
- 149 Experiment 149
- 150 Experiment 150
- 151 Experiment 151
- 152 Experiment 152
- 153 Experiment 153
- 154 Experiment 154
- 155 Experiment 155
- 156 Experiment 156
- 157 Experiment 157
- 158 Experiment 158
- 159 Experiment 159
- 160 Experiment 160
- 161 Experiment 161
- 162 Experiment 162
- 163 Experiment 163
- 164 Experiment 164
- 165 Experiment 165
- 166 Experiment 166
- 167 Experiment 167
- 168 Experiment 168
- 169 Experiment 169
- 170 Experiment 170
- 171 Experiment 171
- 172 Experiment 172
- 173 Experiment 173
- 174 Experiment 174
- 175 Experiment 175
- 176 Experiment 176
- 177 Experiment 177
- 178 Experiment 178
- 179 Experiment 179
- 180 Experiment 180
- 181 Experiment 181
- 182 Experiment 182
- 183 Experiment 183
- 184 Experiment 184
- 185 Experiment 185
- 186 Experiment 186
- 187 Experiment 187
- 188 Experiment 188
- 189 Experiment 189
- 190 Experiment 190
- 191 Experiment 191
- 192 Experiment 192
- 193 Experiment 193
- 194 Experiment 194
- 195 Experiment 195
- 196 Experiment 196
- 197 Experiment 197
- 198 Experiment 198
- 199 Experiment 199
- 200 Experiment 200
- 201 Experiment 201
- 202 Experiment 202
- 203 Experiment 203
- 204 Experiment 204
- 205 Experiment 205
- 206 Experiment 206
- 207 Experiment 207
- 208 Experiment 208
- 209 Experiment 210
- 210 Experiment 211
- 211 Experiment 212
- 212 Experiment 213
- 213 Experiment 214
- 214 Experiment 215
- 215 Experiment 216
