The biological effects of microencapsulated organic acids and botanicals induces tissue-specific and dose-dependent changes to the Gallus gallus microbiota/Experiment 2

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Curated date: 2024/03/27

Curator: Omojokunoluwatomisin

Revision editor(s): Omojokunoluwatomisin, Nityasinghal 14

Subjects

Location of subjects

United States of America

Host species Species from which microbiome was sampled. Contact us to have more species added.

Gallus gallus

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology

Ileum Distal intestine,Intestinum ileum,Lower intestine,Posterior intestine,Ileum,ileum

Group 0 name Corresponds to the control (unexposed) group for case-control studies

chicken with no AviPlus®P. (0 g/MT)

Group 1 name Corresponds to the case (exposed) group for case-control studies

Chicken feed with 500 g/MT

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group

Chickens feed with 500 g/MT of AviPlus®P.

Group 0 sample size Number of subjects in the control (unexposed) group

5

Group 1 sample size Number of subjects in the case (exposed) group

5

Lab analysis

Sequencing type

16S

16S variable region One or more hypervariable region(s) of the bacterial 16S gene

V2

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance

Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).

relative abundances

Statistical test

LEfSe

Significance threshold p-value or FDR threshold used for differential abundance testing (if any)

0.05

LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool

2

Alpha Diversity

Pielou Quantifies how equal the community is numerically

decreased

Shannon Estimator of species richness and species evenness: more weight on species richness

decreased