The biological effects of microencapsulated organic acids and botanicals induces tissue-specific and dose-dependent changes to the Gallus gallus microbiota/Experiment 5
From BugSigDB
Needs review
Subjects
- Location of subjects
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Gallus gallus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Jejunum Intestinum jejunum,Mid-intestine,Middle intestine,Jejunum,jejunum
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Chicken feed with 300g/MT
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Chickens feed with 500 g/MT
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Chickens that were fed with 500 g/MT of AviPlus®P.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 5
- Group 1 sample size Number of subjects in the case (exposed) group
- 5
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V2
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- centered log-ratio
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2
Alpha Diversity
- Pielou Quantifies how equal the community is numerically
- increased
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
Signature 1
Needs review
Source: Figure 4 and text
Description: Differential abundance of taxa as per the LEfSE analysis.
Abundance in Group 1: increased abundance in Chickens feed with 500 g/MT
| NCBI | Quality Control | Links |
|---|---|---|
| Clostridiaceae | ||
| Micrococcaceae |
Revision editor(s): Omojokunoluwatomisin
Signature 2
Needs review
Source: Figure 4 and text
Description: Differential abundance of taxa as per the LEfSE analysis.
Abundance in Group 1: decreased abundance in Chickens feed with 500 g/MT
| NCBI | Quality Control | Links |
|---|---|---|
| Aerococcaceae |
Revision editor(s): Omojokunoluwatomisin
