Study 11

Study information

Needs review

study design

Citation

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Journal

Year

Experiment 1

Needs review

Curated date: 2021/01/10

Curator:

Revision editor(s):

Host species Species from which microbiome was sampled. Contact us to have more species added.: Homo sapiens

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Uterus

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Cervical glandular intraepithelial neoplasia Cervical glandular intraepithelial neoplasia,cervical glandular intraepithelial neoplasia

Group 0 name Corresponds to the control (unexposed) group for case-control studies: HIV pateints with normal tissue at 6 months

Group 1 name Corresponds to the case (exposed) group for case-control studies: HIV patients with lesion at 12 months

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: Cases were identified by HIV rapid or ELISA test and subsequent Western blot following recommendations for HIV diagnosis by the Brazilian Ministry of Health.

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V3-V6

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Illumina

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: relative abundances