Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits/Experiment 14
Subjects
- Location of subjects
- Ethiopia
- Peru
- United Republic of Tanzania
- Zimbabwe
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Population Population,population
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Traditional Lifestyle
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Adadle Agropastoral Lifestyle
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- 2-5 year old children from the Adadle woreda district in Ethiopia with an agropastoral lifestyle, whose samples were taxonomically profiled using mOTUs2.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 40
- Group 1 sample size Number of subjects in the case (exposed) group
- 15
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- log transformation
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Source: Figure S9 B
Description: Boxplots of significantly different relative abundances of bacterial families in the BloSSUM (Bloom or selected in societies of urbanization/modernization) or VANISH (Volatile and/or associated negatively with industrialized societies of humans) categories in a traditional lifestyle and the Adadle agropastoral lifestyle.
Abundance in Group 1: increased abundance in Adadle Agropastoral Lifestyle
| NCBI | Quality Control | Links |
|---|---|---|
| Bifidobacteriaceae | ||
| Erysipelotrichaceae | ||
| Lactobacillaceae | ||
| Streptococcaceae |
Revision editor(s): YokoC
Signature 2
Source: Figure S9 B
Description: Boxplots of significantly different relative abundances of bacterial families in the BloSSUM (Bloom or selected in societies of urbanization/modernization) or VANISH (Volatile and/or associated negatively with industrialized societies of humans) categories in a traditional lifestyle and the Adadle agropastoral lifestyle.
Abundance in Group 1: decreased abundance in Adadle Agropastoral Lifestyle
| NCBI | Quality Control | Links |
|---|---|---|
| Bacteroidaceae | ||
| Prevotellaceae | ||
| Succinivibrionaceae |
Revision editor(s): YokoC
