Gut microbiomes of agropastoral children from the Adadle region of Ethiopia reflect their unique dietary habits/Experiment 6
From BugSigDB
Subjects
- Location of subjects
- Ethiopia
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- COPRO-seq COPRO-seq,cOPRO-seq
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- mOTUs2
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- MetaPhlAn3
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- MetaPhlan3 taxonomic profiling of shotgun metagenomic samples from Adadle woreda 2-5 year old children.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 15
- Group 1 sample size Number of subjects in the case (exposed) group
- 15
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- log transformation
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Source: Figure S7 A
Description: Boxplots of species with a significantly different abundance (Wilcoxon rank test) between the two profiling tools, mOTUs2 and MetaPhlAn3.
Abundance in Group 1: increased abundance in MetaPhlAn3
Revision editor(s): YokoC
Signature 2
Source: Figure S7 A
Description: Boxplots of species with a significantly different abundance (Wilcoxon rank test) between the two profiling tools, mOTUs2 and MetaPhlAn3..
Abundance in Group 1: decreased abundance in MetaPhlAn3
| NCBI | Quality Control | Links |
|---|---|---|
| Actinomyces dentalis | ||
| Actinomyces sp. ICM39 | ||
| Actinomyces viscosus | ||
| Arachnia propionica | ||
| Bacilli bacterium | ||
| Bacillota bacterium | ||
| Bifidobacterium catenulatum subsp. kashiwanohense | ||
| Blautia sp. KLE 1732 | ||
| Candidatus Nanosynbacter lyticus | ||
| Eggerthellaceae bacterium | ||
| Lachnospiraceae bacterium | ||
| Lactobacillales bacterium | ||
| Oscillospiraceae bacterium | ||
| Peptostreptococcaceae bacterium | ||
| Senegalimassilia anaerobia | ||
| Streptococcus gallolyticus | ||
| Streptococcus intermedius | ||
| Streptococcus sp. | ||
| Streptococcus sp. HSISM1 | ||
| bacterium LF-3 | ||
| uncultured Butyricicoccus sp. | ||
| uncultured Candidatus Saccharibacteria bacterium | ||
| uncultured Clostridium sp. | ||
| uncultured Collinsella sp. | ||
| uncultured Eubacterium sp. | ||
| uncultured Faecalibacterium sp. | ||
| uncultured Mogibacterium sp. | ||
| uncultured Prevotella sp. | ||
| uncultured Streptococcus sp. | ||
| uncultured Sutterella sp. | ||
| Eggerthella lenta [C Clostridioides difficile]Eggerthella lenta [C Clostridioides difficile] | <i class="fas text- fa-comment" title="The part "]" of the query was not understood.</br>Results might not be as expected. - Review"> | |
| Actinomyces sp. [ICM58/oral taxon 172]Actinomyces sp. [ICM58/oral taxon 172] | <i class="fas text- fa-comment" title="The part "]" of the query was not understood.</br>Results might not be as expected. - Review"> | |
| Actinomyces sp. [oral taxon 181/ph3]Actinomyces sp. [oral taxon 181/ph3] | <i class="fas text- fa-comment" title="The part "]" of the query was not understood.</br>Results might not be as expected. - Review"> | |
| Streptococcus ilei | ||
| Phocaeicola sp. | ||
| Bacteroides sp. |
Revision editor(s): YokoC
