Metagenomic analysis reveals linkages between cecal microbiota and feed efficiency in Xiayan chickens/Experiment 3
From BugSigDB
Reviewed Marked as Reviewed by Svetlana up on 2024-12-13
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Gallus gallus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Caecum Blind intestine,Blindgut,Caeca,Caecum,Ceca,Cecum,Intestinum caecum,Intestinum crassum caecum,Intestinum crassum cecum,caecum
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Growth condition GrowthCondition,Growth condition,growth condition
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Male Low Feed Efficiency (M-LFE) groups
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Male High Feed Efficiency (M-HFE) groups
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Male chickens with the lowest Residual Feed Intake(RFI)
- Group 0 sample size Number of subjects in the control (unexposed) group
- 3
- Group 1 sample size Number of subjects in the case (exposed) group
- 3
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Kruskall-Wallis
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Reviewed Marked as Reviewed by Svetlana up on 2024-12-13
Source: Table 2
Description: Relative abundance of the dominant phyla and genera in the cecum of the high and low feed efficiency (FE) groups of male chickens.
Abundance in Group 1: increased abundance in Male High Feed Efficiency (M-HFE) groups
| NCBI | Quality Control | Links |
|---|---|---|
| Actinomycetota | ||
| Alistipes | ||
| Bacillota | ||
| Lachnoclostridium | ||
| Lactobacillus | ||
| Megamonas | ||
| Parabacteroides | ||
| Prevotella | ||
| Pseudomonadota | ||
| unidentified | ||
| Elusimicrobiota |
Revision editor(s): Tosin, Aleru Divine
Signature 2
Reviewed Marked as Reviewed by Svetlana up on 2024-12-13
Source: Table 2
Description: Relative abundance of the dominant phyla and genera in the cecum of the high and low feed efficiency (FE) groups of male chickens.
Abundance in Group 1: decreased abundance in Male High Feed Efficiency (M-HFE) groups
| NCBI | Quality Control | Links |
|---|---|---|
| Bacteroides | ||
| Bacteroidota | ||
| Blautia | ||
| Mediterranea | ||
| Methanobacteriota | ||
| Muribaculum | ||
| Spirochaetota | ||
| Synergistota | ||
| Verrucomicrobiota | ||
| Fusobacteriota |
Revision editor(s): Tosin
