Microbiota from alginate oligosaccharide-dosed mice successfully mitigated small intestinal mucositis/Experiment 1
From BugSigDB
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Mus musculus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Mucositis Mucositis,mucositis
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- BA0
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- BA10
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Treatment group for mice injected with 40 mg/kg BW (body weight) busulfan once then dosed with 10 mg/kg BW (body weight) AOS(alginate oligosaccharide-dosed.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 15
- Group 1 sample size Number of subjects in the case (exposed) group
- 15
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 4
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
Signature 1
Source: Figure 1d
Description: Significant different taxa between BA0 and BA10.
Abundance in Group 1: increased abundance in BA10
| NCBI | Quality Control | Links |
|---|---|---|
| Aerococcaceae | ||
| Aerococcus | ||
| Bacteroidaceae | ||
| Bacteroides | ||
| Bacteroides ovatus | ||
| Enterobacterales | ||
| Enterobacteriaceae | ||
| Escherichia | ||
| Escherichia coli |
Revision editor(s): Tosin
Signature 2
Source: Figure 1d
Description: Significant different taxa between BA0 and BA10.
Abundance in Group 1: decreased abundance in BA10
| NCBI | Quality Control | Links |
|---|---|---|
| Deferribacteraceae | ||
| Deferribacterales | ||
| Deferribacteres | ||
| Mucispirillum | ||
| Mucispirillum schaedleri |
Revision editor(s): Tosin
