Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn's disease/Experiment 18
From BugSigDB
Reviewed Marked as Reviewed by Svetlana up on 2025-1-3
Subjects
- Location of subjects
- Germany
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Mus musculus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Exposure Exposure,exposure
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Unsorted cells
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Ethanol (EtOH)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Model Patient 2 (MP2) samples dissolved in ethanol.
Lab analysis
- Sequencing type
- WMS
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- ANOVA
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Reviewed Marked as Reviewed by Svetlana up on 2025-1-3
Source: Figure 2E
Description: Relative abundances of significantly enriched and depleted zOTUs in MP2.
Abundance in Group 1: increased abundance in Ethanol (EtOH)
| NCBI | Quality Control | Links |
|---|---|---|
| Peptostreptococcus anaerobius |
Revision editor(s): Aleru Divine
Signature 2
Needs review
Source: Figure 2E
Description: Relative abundances of significantly enriched and depleted zOTUs in MP2.
Abundance in Group 1: decreased abundance in Ethanol (EtOH)
| NCBI | Quality Control | Links |
|---|---|---|
| [Clostridium] scindens | ||
| Thomasclavelia ramosa | ||
| Ruthenibacterium lactatiformans | ||
| Phocaeicola vulgatus |
Revision editor(s): Aleru Divine
