Oral Microbiota Changes in Elderly Patients, an Indicator of Alzheimer's Disease

From BugSigDB
Needs review
study design
Citation
PMID PubMed identifier for scientific articles.
DOI Digital object identifier for electronic documents.
URI
Authors
Wu YF, Lee WF, Salamanca E, Yao WL, Su JN, Wang SY, Hu CJ, Chang WJ
Journal
International journal of environmental research and public health
Year
2021
Keywords:
Alzheimer’s disease, dental hygiene, neuroscience/neurobiology, oral health, oral microbiota, plaque/plaque biofilms
Alzheimer's disease (AD) is a neurodegenerative disease that usually affects older individuals. Owing to the higher incidence of root caries and missing teeth in elderly individuals, the bacteria involved in these dental concerns might potentially deteriorate their cognitive function. Altered microbiota in the oral cavity may induce neuroinflammation through migration from the oral cavity to the brain. However, the correlation between the composition of the oral microbiota and neurodegenerative disease remains unclear. In this study, we evaluated sequence to determine the relative abundance and diversity of bacterial taxa in the dental plaque of elderly patients with AD and controls. Oral samples; the DMFT index; and other clinical examination data were collected from 17 patients with AD and 18 normal elderly individuals as the control group. Patients with AD had significantly more missing teeth and higher dental plaque weight but lower microbial diversity than controls. Significantly increased numbers of Lactobacillales, Streptococcaceae, and Firmicutes/Bacteroidetes and a significantly decreased number of Fusobacterium were observed in patients with AD. In conclusion, using the PacBio single-molecule real-time (SMRT) sequencing platform to survey the microbiota dysbiosis biomarkers in the oral cavity of elderly individuals could serve as a tool to identify patients with AD.

Experiment 1


Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Subjects

Location of subjects
Taiwan
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Dental plaque Bacterial plaque,Plaque,Dental plaque,dental plaque
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Alzheimer's disease [X]Dementia in Alzheimer's disease,[X]Dementia in Alzheimer's disease (disorder),AD,AD - Alzheimer's disease,Alzheimer Dementia,Alzheimer dementia,Alzheimer Dementia, Presenile,ALZHEIMER DIS,Alzheimer Disease,Alzheimer disease,Alzheimer disease, familial,Alzheimer Type Dementia,Alzheimer's,Alzheimer's Dementia,Alzheimer's dementia,Alzheimer's disease,Alzheimer's disease (disorder),Alzheimer's disease, NOS,Alzheimers,Alzheimers Dementia,Alzheimers dementia,ALZHEIMERS DIS,Alzheimers disease,DAT - Dementia Alzheimer's type,Dementia in Alzheimer's disease,Dementia in Alzheimer's disease (disorder),Dementia in Alzheimer's disease, unspecified (disorder),Dementia of the Alzheimer's type,Dementia, Alzheimer Type,Dementia, Presenile,Dementia, Presenile Alzheimer,Disease, Alzheimer,Disease, Alzheimer's,Presenile Alzheimer Dementia,sporadic Alzheimer's disease,alzheimer's disease
Group 0 name Corresponds to the control (unexposed) group for case-control studies
Controls
Group 1 name Corresponds to the case (exposed) group for case-control studies
Alzheimer's Disease (AD) patients
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
Patients with Alzheimer's Disease
Group 0 sample size Number of subjects in the control (unexposed) group
18
Group 1 sample size Number of subjects in the case (exposed) group
17
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
2 months

Lab analysis

Sequencing type
16S
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
Mann-Whitney (Wilcoxon)
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
No


Signature 1

Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Source: Figure 3

Description: Comparison of relative abundance at the oral bacteria

Abundance in Group 1: increased abundance in Alzheimer's Disease (AD) patients

NCBI Quality ControlLinks
Bacteroidia
Lactobacillales
Streptococcaceae
Streptococcus

Revision editor(s): AaishahM

Signature 2

Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Source: Figure 3

Description: Comparison of relative abundance at the oral bacteria

Abundance in Group 1: decreased abundance in Alzheimer's Disease (AD) patients

NCBI Quality ControlLinks
Fusobacteriia
Fusobacteriales
Cardiobacteriales
Fusobacteriaceae
Porphyromonadaceae
Cardiobacteriaceae
Fusobacterium
Porphyromonas
Cardiobacterium

Revision editor(s): AaishahM

Experiment 2


Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Differences from previous experiment shown

Subjects

Lab analysis

Statistical Analysis

Statistical test
LEfSe
LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
2.0


Signature 1

Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Source: Figure 5

Description: Differentially abundant taxa in the AD and control groups

Abundance in Group 1: increased abundance in Alzheimer's Disease (AD) patients

NCBI Quality ControlLinks
unclassified Lactobacillales
Streptococcaceae
Lactobacillales
Bacilli
Shuttleworthella
Streptococcus

Revision editor(s): AaishahM

Signature 2

Needs review

Curated date: 2024/12/12

Curator: AaishahM

Revision editor(s): AaishahM

Source: Figure 5

Description: Differentially abundant taxa in the AD and control groups

Abundance in Group 1: decreased abundance in Alzheimer's Disease (AD) patients

NCBI Quality ControlLinks
Porphyromonadaceae
Fusobacteriaceae
Rhodocyclaceae
Rhodocyclales
Cardiobacteriaceae
Cardiobacteriales
Cardiobacterium
Tannerella
Alloprevotella
Fusobacterium

Revision editor(s): AaishahM