Effects of Glucagon-Like Peptide-1 Receptor Agonists on Gut Microbiota in Dehydroepiandrosterone-Induced Polycystic Ovary Syndrome Mice: Compared Evaluation of Liraglutide and Semaglutide Intervention/Experiment 1

From BugSigDB


Reviewed Marked as Reviewed by Svetlana up on 2025-1-30

Curated date: 2025/01/02

Curator: Victoria

Revision editor(s): Victoria

Subjects

Location of subjects
China
Host species Species from which microbiome was sampled. Contact us to have more species added.
Mus musculus
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Polycystic ovary syndrome Cystic disease of ovaries,hyperandrogenemia,Multicystic ovaries,multicystic ovaries,Ovarian Degeneration, Sclerocystic,Ovarian Syndrome, Polycystic,Ovarian Syndromes, Polycystic,Ovaries, Sclerocystic,Ovary Syndrome, Polycystic,Ovary, Sclerocystic,PCO - Polycystic ovaries,Pco1,PCOD - Polycystic ovarian disease,PCOS,Pcos,PCOS - Polycystic ovarian syndrome,PCOS1,Polycystic ovarian disease,polycystic ovarian disease,Polycystic ovarian syndrome,Polycystic ovaries,polycystic ovaries,Polycystic ovaries (disorder),polycystic ovary,polycystic ovary syndrome,polycystic ovary syndrome 1,Sclerocystic Ovarian Degeneration,Sclerocystic Ovaries,Sclerocystic Ovary,Sclerocystic Ovary Syndrome,Stein Leventhal Syndrome,Stein-Leventhal synd.,Stein-Leventhal Syndrome,Stein-Leventhal syndrome,Syndrome, Polycystic Ovary,Syndrome, Stein-Leventhal,Polycystic ovary syndrome
Group 0 name Corresponds to the control (unexposed) group for case-control studies
Healthy control group
Group 1 name Corresponds to the case (exposed) group for case-control studies
Polycystic ovary syndrome group (PCOS)
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
Mice with Dehydroepiandrosterone (DHEA)-induced Polycystic ovary syndrome (PCOS).
Group 0 sample size Number of subjects in the control (unexposed) group
6
Group 1 sample size Number of subjects in the case (exposed) group
6

Lab analysis

Sequencing type
WMS
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
LEfSe
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
No
LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
3


Signature 1

Reviewed Marked as Reviewed by Svetlana up on 2025-1-30

Curated date: 2025/01/03

Curator: Victoria

Revision editor(s): Victoria

Source: Figure 3B

Description: LDA (linear discriminant analysis) scores for the species abundance in the control and PCOS groups.

Abundance in Group 1: increased abundance in Polycystic ovary syndrome group (PCOS)

NCBI Quality ControlLinks
Bacteroides acidifaciens
Duncaniella dubosii
Escherichia coli
Lepagella muris
Muribaculaceae bacterium
Paramuribaculum intestinale
unclassified Bacteroidales
unclassified Bacteroides
unclassified Enterobacteriaceae
Muribaculaceae bacterium Isolate-104 (HZI)
Muribaculaceae bacterium Isolate-110 (HZI)
Muribaculaceae bacterium Isolate-037 (Harlan)
Muribaculaceae bacterium Isolate-105 (HZI)
Barnesiella sp. CU968
Muribaculaceae bacterium Isolate-114 (HZI)
Muribaculaceae bacterium Isolate-004 (NCI)
Muribaculaceae bacterium Isolate-036 (Harlan)

Revision editor(s): Victoria

Signature 2

Reviewed Marked as Reviewed by Svetlana up on 2025-1-30

Curated date: 2025/01/03

Curator: Victoria

Revision editor(s): Victoria

Source: Figure 3B

Description: LDA (linear discriminant analysis) scores for the species abundance in the control and PCOS groups.

Abundance in Group 1: decreased abundance in Polycystic ovary syndrome group (PCOS)

NCBI Quality ControlLinks
bacterium 1xD42-87
Lachnospiraceae bacterium MD335
Lachnospiraceae bacterium
Muribaculum intestinale
Taurinivorans muris
Alistipes muris
Lachnospiraceae bacterium 10-1
Lachnospiraceae bacterium A4
bacterium 0.1xD8-71
Caudoviricetes sp.
Acetatifactor muris
unclassified Helicobacter
Lachnospiraceae bacterium 28-4
Acetatifactor aquisgranensis
Flintibacter muris
Sporofaciens musculi
Muribaculaceae bacterium Isolate-042 (Harlan)
Schaedlerella arabinosiphila
Oscillibacter sp. CU971
Oscillibacter sp. 1-3
unclassified Eubacteriales
Firmicutes bacterium ASF500
Eubacterium sp. 14-2
Eubacterium plexicaudatum
Helicobacter sp. MIT 03-1616

Revision editor(s): Victoria