The blood pressure lowering effect of beetroot juice is impaired in periodontitis and recovered after periodontal treatment
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Saliva Sailva normalis,Saliva atomaris,Saliva molecularis,Salivary gland secretion,Saliva,saliva
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Periodontitis chronic pericementitis,inflammation of periodontium,Pericementitides,Pericementitis,Periodontitides,periodontitis,Periodontitis (disorder),Periodontitis, NOS,periodontium inflammation,periodontosis,Periodontitis
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy controls
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Periodontitis for the subgingival plaque samples
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- To test the effect of periodontitis, before (BL) and after (D70) periodontal treatment, on the blood-pressure lowering effect of beetroot juice.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 13
- Group 1 sample size Number of subjects in the case (exposed) group
- 13
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 3 months
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- raw counts
- Statistical test
- ANCOM-BC
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- Matched on Factors on which subjects have been matched on in a case-control study
- blood pressure
Alpha Diversity
- Chao1 Abundance-based estimator of species richness
- increased
- Richness Number of species
- increased
Signature 1
Source: Supplementary Figure 2A and Figure 6A
Description: Bar graphs show comparisons between healthy individuals (H) and periodontitis patients at baseline (BL) in subgingival plaque
Abundance in Group 1: increased abundance in Periodontitis for the subgingival plaque samples
Revision editor(s): Miss Lulu
Signature 2
Source: Supplementary Figure 2A and Figure 6A
Description: Bar graphs show comparisons between healthy individuals (H) and periodontitis patients at baseline (BL) in subgingival plaque
Abundance in Group 1: decreased abundance in Periodontitis for the subgingival plaque samples
NCBI | Quality Control | Links |
---|---|---|
Alloprevotella | ||
Alloprevotella tannerae | ||
Filifactor | ||
Lentimicrobium | ||
Peptostreptococcus | ||
Phocaeicola | ||
Prevotella intermedia | ||
Rikenellaceae | ||
Veillonellaceae |
Revision editor(s): Miss Lulu
Signature 3
Source: Supplementary Figure 2B and Figure 6B
Description: Bar graphs show comparisons between periodontitis patients at baseline (BL) and 70 days after treatment (D70) in subgingival plaque
Abundance in Group 1: increased abundance in Periodontitis for the subgingival plaque samples
NCBI | Quality Control | Links |
---|---|---|
Actinomyces | ||
Actinomyces naeslundii | ||
Actinomyces oris | ||
Actinomycetes | ||
Granulicatella | ||
Haemophilus | ||
Lautropia mirabilis | ||
Rothia dentocariosa | ||
Streptococcus |
Revision editor(s): Miss Lulu
Signature 4
Source: Supplementary Figure 2B and Figure 6B
Description: Bar graphs show comparisons between periodontitis patients at baseline (BL) and 70 days after treatment (D70) in subgingival plaque
Abundance in Group 1: decreased abundance in Periodontitis for the subgingival plaque samples
NCBI | Quality Control | Links |
---|---|---|
Filifactor | ||
Fretibacterium | ||
Peptostreptococcus | ||
Porphyromonas | ||
Rikenellaceae | ||
Tannerella forsythia |
Revision editor(s): Miss Lulu
Experiment 2
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Periodontitis for the tongue samples
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- To test how nitrate-reducing bacteria on the tongue were affected by periodontitis(BL and D70)
- Group 1 sample size Number of subjects in the case (exposed) group
- 14
Lab analysis
Statistical Analysis
- Matched on Factors on which subjects have been matched on in a case-control study
- Not specified
Alpha Diversity
- Chao1 Abundance-based estimator of species richness
- decreased
- Richness Number of species
- decreased
Signature 1
Source: Supplementary Figure 2C and Figure 6C
Description: Bar graphs show comparisons between healthy individuals (H) and periodontitis patients at baseline (BL) in tongue coating.
Abundance in Group 1: increased abundance in Periodontitis for the tongue samples
NCBI | Quality Control | Links |
---|---|---|
Actinobacillus | ||
Cardiobacterium | ||
Gemella | ||
Gemella sanguinis | ||
Haemophilus | ||
Rothia dentocariosa | ||
Veillonella | ||
Veillonella rogosae |
Revision editor(s): Miss Lulu
Signature 2
Source: Supplementary Figure 2C and Figure 6C
Description: Bar graphs show comparisons between healthy individuals (H) and periodontitis patients at baseline (BL) in tongue coating.
Abundance in Group 1: decreased abundance in Periodontitis for the tongue samples
NCBI | Quality Control | Links |
---|---|---|
Lachnospiraceae |
Revision editor(s): Miss Lulu
Signature 3
Source: Supplementary Figure 2D and Figure 6D
Description: Bar graphs show comparisons between D70 and BL in tongue coating
Abundance in Group 1: decreased abundance in Periodontitis for the tongue samples
NCBI | Quality Control | Links |
---|---|---|
Filifactor | ||
Porphyromonas gingivalis | ||
Filifactor alocis |
Revision editor(s): Miss Lulu
Signature 4
Source: Supplementary Figure 2E and Figure 6E
Description: Bar graphs show comparisons between h and D70 in tongue coating
Abundance in Group 1: decreased abundance in Periodontitis for the tongue samples
NCBI | Quality Control | Links |
---|---|---|
Actinobacillus | ||
Leptotrichia | ||
Actinobacillus pleuropneumoniae |
Revision editor(s): Miss Lulu