Microarray analysis reveals marked intestinal microbiota aberrancy in infants having eczema compared to healthy children in at-risk for atopic disease/Experiment 1

From BugSigDB


Reviewed Marked as Reviewed by Folakunmi on 2024-2-26

Curated date: 2021/01/10

Curator: WikiWorks

Revision editor(s): WikiWorks, Folakunmi

Subjects

Location of subjects
Finland
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Eczema Eczema,eczema
Group 0 name Corresponds to the control (unexposed) group for case-control studies
healthy control
Group 1 name Corresponds to the case (exposed) group for case-control studies
child with eczema
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
child with eczema
Group 0 sample size Number of subjects in the control (unexposed) group
19
Group 1 sample size Number of subjects in the case (exposed) group
15

Lab analysis

Sequencing type
16S
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Human Intestinal Tract Chip

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
ANOVA
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
No

Alpha Diversity

Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
increased

Signature 1

Reviewed Marked as Reviewed by Folakunmi on 2024-2-25

Curated date: 2021/01/10

Curator: Lucy Mellor

Revision editor(s): Fatima, WikiWorks

Source: Table 2

Description: Differences in microbiota of healthy and eczematous children at 18 months of age

Abundance in Group 1: increased abundance in child with eczema

NCBI Quality ControlLinks
Ruminococcus bromii
[Clostridium] nexile
[Ruminococcus] lactaris
[Clostridium] leptum
[Clostridium] cellulosi

Revision editor(s): Fatima, WikiWorks

Signature 2

Reviewed Marked as Reviewed by Folakunmi on 2024-2-25

Curated date: 2021/01/10

Curator: Lucy Mellor

Revision editor(s): WikiWorks

Source: Table 2

Description: Differences in microbiota of healthy and eczematous children at 18 months of age

Abundance in Group 1: decreased abundance in child with eczema

NCBI Quality ControlLinks
Bacteroides fragilis
Bacteroides ovatus
Phocaeicola plebeius
Bacteroides stercoris
Bacteroides uniformis
Phocaeicola vulgatus
Alloprevotella tannerae
Bacteroidota

Revision editor(s): WikiWorks