Sex-specific impact of asthma during pregnancy on infant gut microbiota/Experiment 2
From BugSigDB
Reviewed Marked as Reviewed by Folakunmi on 2024-2-27
Curated date: 2021/01/10
Curator: WikiWorks
Revision editor(s): WikiWorks, ChiomaBlessing, Folakunmi
Subjects
- Location of subjects
- Canada
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Asthma Airway hyperreactivity,asthma,Asthma (disorder),Asthma NOS,Asthma NOS (disorder),ASTHMA NOS W (AC) EXAC,Asthma unspecified,Asthma unspecified (disorder),Asthma, Bronchial,Asthma, unspecified,Asthma, unspecified type, with acute exacerbation,Asthma, unspecified type, without mention of status asthmaticus,Asthmas,Asthmatic,BHR - Bronchial hyperreactivity,Bronchial asthma,Bronchial Hyperreactivities,Bronchial hyperreactivity,bronchial hyperreactivity,Bronchial hyperresponsiveness,Bronchial hypersensitivity,chronic obstructive asthma,chronic obstructive asthma with acute exacerbation,chronic obstructive asthma with status asthmaticus,DUST PNEUMONOPATHY NEC,Exercise induced asthma,exercise induced asthma,Exercise-induced asthma,exercise-induced asthma,Exercise-induced asthma (disorder),Hyperreactive airway disease,Hyperreactive airways disease,Hyperreactivities, Bronchial,Hyperreactivity, Bronchial,Other forms of asthma,Pneumonopathy due to inhalation of other dust,Pneumopathy due to inhalation of other dust,Pneumopathy due to inhalation of other dust (disorder),Pneumopathy due to inhalation of other dust NOS,Pneumopathy due to inhalation of other dust NOS (disorder),Asthma
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- no asthma
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- maternal asthma
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- female caucasian infants born to mothers who had prenatal asthma
- Group 0 sample size Number of subjects in the control (unexposed) group
- 430
- Group 1 sample size Number of subjects in the case (exposed) group
- 46
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- LEfSe
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- LDA Score above Threshold for the linear discriminant analysis (LDA) score for studies using the popular LEfSe tool
- 2
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Chao1 Abundance-based estimator of species richness
- unchanged
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- unchanged
Signature 1
Reviewed Marked as Reviewed by Folakunmi on 2024-2-27
Curated date: 2021/01/10
Curator: Lucy Mellor
Revision editor(s): WikiWorks, KathyWaldron, ChiomaBlessing, Folakunmi
Source: Figure 1b
Description: Linear discriminant analysis (LDA) plots for maternal prenatal atopic asthma for those who gave birth to female caucasian infants compared to no asthma group.
Abundance in Group 1: increased abundance in maternal asthma
| NCBI | Quality Control | Links |
|---|---|---|
| Bacteroidaceae | ||
| Bacteroidales | ||
| Bacteroides | ||
| Bacteroides fragilis | ||
| Bacteroidia | ||
| Bacteroidota | ||
| Pseudomonas | ||
| unclassified Pseudomonas |
Revision editor(s): WikiWorks, KathyWaldron, ChiomaBlessing, Folakunmi
Signature 2
Reviewed Marked as Reviewed by Folakunmi on 2024-2-27
Curated date: 2021/01/10
Curator: Lucy Mellor
Revision editor(s): WikiWorks, Merit, ChiomaBlessing, Folakunmi
Source: Figure 1b
Description: Linear discriminant analysis (LDA) plots for maternal prenatal atopic asthma for those who gave birth to female caucasian infants compared to no asthma group.
Abundance in Group 1: decreased abundance in maternal asthma
| NCBI | Quality Control | Links |
|---|---|---|
| Megasphaera | ||
| unclassified Megasphaera | ||
| Clostridium sp. |
Revision editor(s): WikiWorks, Merit, ChiomaBlessing, Folakunmi
