Modulation of potential respiratory pathogens by pH1N1 viral infection
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Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Curated date: 2021/06/09
Curator: Claregrieve1
Revision editor(s): LGeistlinger, Fatima, Claregrieve1, WikiWorks
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled (if applicable)
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Throat Gula,Throat
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- influenza A (H1N1) influenza A (H1N1)
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Pneumonia patients without any influenza A infection
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Pneumonia patients with pH1N1 infection
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Positive lab test (real-time PCR or cell culture) and criteria for pneumonia simultaneously met, with pH1N1 infection
- Group 0 sample size Number of subjects in the control (unexposed) group
- 11
- Group 1 sample size Number of subjects in the case (exposed) group
- 11
Lab analysis
- Sequencing type
- WMS
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- DESeq2
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
Signature 1
Source: Figure 1a-c
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients
Abundance in Group 1: increased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Bacillota | |
Pseudomonadota | |
Bacillaceae | |
Moraxellaceae | |
Pseudomonadaceae | |
Acinetobacter ⚠� | |
Pseudomonas ⚠� | |
Bacillus ⚠� |
Revision editor(s): Claregrieve1
Signature 2
Source: Figure 1a-c
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients
Abundance in Group 1: decreased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Bacteroidota | |
Prevotellaceae | |
Veillonellaceae | |
Neisseriaceae | |
Neisseria � | |
Prevotella � | |
Veillonella � |
Revision editor(s): Claregrieve1
Signature 3
Source: Figure 1b
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients at the family level
Abundance in Group 1: increased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Bacillaceae | |
Moraxellaceae | |
Pseudomonadaceae |
Revision editor(s): Claregrieve1
Signature 4
Source: Figure 1b
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients at the family level
Abundance in Group 1: decreased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Neisseriaceae | |
Prevotellaceae | |
Veillonellaceae |
Revision editor(s): Claregrieve1
Signature 5
Source: Figure 1c
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients at the genus level
Abundance in Group 1: increased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Acinetobacter ⚠� | |
Bacillus ⚠� | |
Pseudomonas ⚠� |
Revision editor(s): Claregrieve1
Signature 6
Source: Figure 1c
Description: Relative microbial abundance of pH1N1-infected and uninfected pneumonia patients at the genus level
Abundance in Group 1: decreased abundance in Pneumonia patients with pH1N1 infection
NCBI | Links |
---|---|
Neisseria � | |
Prevotella � | |
Veillonella � |
Revision editor(s): Claregrieve1