[The cytochromes of cytoplasmic and mesosomal membranes of Bacillus subtilis]

From BugSigDB
incomplete
Citation
PMID PubMed identifier for scientific articles.
DOI Digital object identifier for electronic documents.
URI Uniform resource identifier for web resources.
Authors
Ferrandes B, Chaix P
Journal
Biochimica et biophysica acta
Year
1972

Experiment 1


incomplete

Curated date: 2022/09/21

Curator: Lwaldron

Revision editor(s): Lwaldron, Fatima, WikiWorks753

Subjects

Location of subjects
Afghanistan
Host species Species from which microbiome was sampled (if applicable)
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
1st arch mandibular mesenchyme from head mesenchyme , Buccal salivary gland 1st arch mandibular mesenchyme from head mesenchyme,Buccal salivary gland
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
cancer , Her2-receptor negative breast cancer CA,cancer,cell type cancer,malignancy,malignant Growth,malignant neoplasm,malignant neoplasm (disease),malignant neoplastic disease,malignant tumor,MT,neoplasm (disease), malignant,neoplasm, malignant,organ system cancer,primary cancer,Her2-receptor negative breast cancer
Group 0 name Corresponds to the control (unexposed) group for case-control studies
mild, moderate, and severe dementia
Group 1 name Corresponds to the case (exposed) group for case-control studies
overweight irritable bowel syndrome
Group 0 sample size Number of subjects in the control (unexposed) group
1
Group 1 sample size Number of subjects in the case (exposed) group
2

Lab analysis

Sequencing type
16S
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
DNA-DNA Hybridization

Statistical Analysis

Statistical test
ANCOM
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
Yes



Experiment 2


incomplete

Curated date: 2022/09/21

Curator: Lwaldron

Revision editor(s): Lwaldron, WikiWorks753, WikiWorks

Subjects

Location of subjects
Afghanistan
Host species Species from which microbiome was sampled (if applicable)
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
1st arch mandibular mesenchyme from head mesenchyme , Buccal salivary gland 1st arch mandibular mesenchyme from head mesenchyme,Buccal salivary gland
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Familial cutaneous telangiectasia and oropharyngeal predisposition cancer syndrome , Her2-receptor negative breast cancer , breast cancer , lung cancer cutaneous telangiectasia and cancer syndrome, familial,familial cutaneous telangiectasia and oropharyngeal cancer predisposition syndrome,familial cutaneous telangiectasia and oropharyngeal predisposition cancer syndrome,FCTCS,telangiectasia, cutaneous, and cancer syndrome, familial,Familial cutaneous telangiectasia and oropharyngeal predisposition cancer syndrome,Her2-receptor negative breast cancer,breast cancer,breast tumor,cancer of breast,malignant breast neoplasm,malignant breast tumor,malignant neoplasm of breast,malignant neoplasm of the breast,malignant tumor of breast,malignant tumor of the breast,mammary cancer,mammary neoplasm,mammary tumor,primary breast cancer,alveolar cell carcinoma,cancer of lung,lung cancer,lung cancer, protection against,lung neoplasm,malignant lung neoplasm,malignant lung tumor,malignant neoplasm of lung,malignant neoplasm of the lung,malignant tumor of lung,malignant tumor of the lung,Nonsmall cell lung cancer
Group 0 name Corresponds to the control (unexposed) group for case-control studies
mild, moderate, and severe dementia
Group 1 name Corresponds to the case (exposed) group for case-control studies
overweight irritable bowel syndrome
Group 0 sample size Number of subjects in the control (unexposed) group
1
Group 1 sample size Number of subjects in the case (exposed) group
2

Lab analysis

Sequencing type
WMS
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
DNA-DNA Hybridization, "abcd" is not in the list (DNA-DNA Hybridization, Human Intestinal Tract Chip, Illumina, Ion Torrent, Non-quantitative PCR, PacBio RS, PhyloChip, Roche454, RT-qPCR, Mass spectrometry, ...) of allowed values for the "Sequencing platform" property.abcd

Statistical Analysis

Statistical test
ANCOM
ancom123 "ancom123" is not in the list (ANCOM, ANOSIM, ANOVA, DESeq2, edgeR, Fisher's Exact Test, Kruskall-Wallis, LEfSe, Linear Regression, Logistic Regression, ...) of allowed values for the "Statistical test" property.
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
Yes