Linking gut microbiota, metabolic syndrome and economic status based on a population-level analysis

Study information

Needs review

study design

cross-sectional observational, not case-control

Citation

PMID PubMed identifier for scientific articles.

30249275

DOI Digital object identifier for electronic documents.

10.1186/s40168-018-0557-6.

URI

https://pubmed.ncbi.nlm.nih.gov/30249275/

Authors

He Y, Wu W, Wu S, Zheng HM, Li P, Sheng HF, Chen MX, Chen ZH, Ji GY, Zheng ZD, Mujagond P, Chen XJ, Rong ZH, Chen P, Lyu LY, Wang X, Xu JB, Wu CB, Yu N, Xu YJ, Yin J, Raes J, Ma WJ, Zhou HW

Journal

Microbiome

Year

2018

Keywords:

16S rRNA gene sequencing, Economic status, Epidemiology, Faecal microbiome, Guangdong Gut Microbiome Project, Metabolic syndrome, Population level survey

BACKGROUND: The metabolic syndrome (MetS) epidemic is associated with economic development, lifestyle transition and dysbiosis of gut microbiota, but these associations are rarely studied at the population scale. Here, we utilised the Guangdong Gut Microbiome Project (GGMP), the largest Eastern population-based gut microbiome dataset covering individuals with different economic statuses, to investigate the relationships between the gut microbiome and host physiology, diet, geography, physical activity and socioeconomic status. RESULTS: At the population level, 529 OTUs were significantly associated with MetS. OTUs from Proteobacteria and Firmicutes (other than Ruminococcaceae) were mainly positively associated with MetS, whereas those from Bacteroidetes and Ruminococcaceae were negatively associated with MetS. Two hundred fourteen OTUs were significantly associated with host economic status (140 positive and 74 negative associations), and 157 of these OTUs were also MetS associated. A microbial MetS index was formulated to represent the overall gut dysbiosis of MetS. The values of this index were significantly higher in MetS subjects regardless of their economic status or geographical location. The index values did not increase with increasing personal economic status, although the prevalence of MetS was significantly higher in people of higher economic status. With increased economic status, the study population tended to consume more fruits and vegetables and fewer grains, whereas meat consumption was unchanged. Sedentary time was significantly and positively associated with higher economic status. The MetS index showed an additive effect with sedentary lifestyle, as the prevalence of MetS in individuals with high MetS index values and unhealthy lifestyles was significantly higher than that in the rest of the population. CONCLUSIONS: The gut microbiome is associated with MetS and economic status. A prolonged sedentary lifestyle, rather than Westernised dietary patterns, was the most notable lifestyle change in our Eastern population along with economic development. Moreover, gut dysbiosis and a Western lifestyle had an additive effect on increasing MetS prevalence.

Experiment 1

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Curated date: 2022/06/23

Curator: Kaluifeanyi101

Revision editor(s): Kaluifeanyi101, Peace Sandy, Fiddyhamma

Subjects

Location of subjects: China

Host species Species from which microbiome was sampled. Contact us to have more species added.: Homo sapiens

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Socioeconomic status class,Socioeconomic status,socioeconomic status,socioeconomic factors

Group 1 name Corresponds to the case (exposed) group for case-control studies: underdeveloped cities vs developed cities

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: 7009 Individuals' fecal samples from underdeveloped cities with GDP/capita of 22.1K to 25.3K CNY, and those from developed cities with GDP/capita of 149.5K to 136.1K CNY. (continuous variables)

Group 1 sample size Number of subjects in the case (exposed) group: 7009

Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any): Unspecified.

Lab analysis

Sequencing type: 16S

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V3-V4

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: relative abundances

Statistical test: Mann-Whitney (Wilcoxon)

Significance threshold p-value or FDR threshold used for differential abundance testing (if any): .05

MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?: Yes

Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment: age, sex, Confounders controlled for: "bristol stool scale" is not in the list (abnormal glucose tolerance, acetaldehyde, acute graft vs. host disease, acute lymphoblastic leukemia, acute myeloid leukemia, adenoma, age, AIDS, alcohol consumption measurement, alcohol drinking, ...) of allowed values.bristol stool scale, geographic area

Alpha Diversity

Shannon Estimator of species richness and species evenness: more weight on species richness: unchanged

Signature 1

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Curated date: 2022/06/23

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Source: Figure 4a

Description: Associations between OTUs and host economic status. a Stacked plot showing the number of OTUs that are positively associated with income or spending (continuous variables).

Colors correspond to taxonomies in the legend.

Abundance in Group 1: increased abundance in underdeveloped cities vs developed cities

NCBI	Quality Control	Links
Bacteroides
Betaproteobacteria
Lachnospiraceae
Parabacteroides
Rikenellaceae
Ruminococcus
Veillonellaceae

Revision editor(s): Kaluifeanyi101

Signature 2

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Mark reviewed

Your review change was submitted

Needs review

Curated date: 2022/06/23

Curator: Kaluifeanyi101

Revision editor(s): Kaluifeanyi101

Source: Figure 4a

Description: Associations between OTUs and host economic status. A Stacked plot showing the number of OTUs that are negatively associated with income or spending (continuous variables). Colors correspond to taxonomies in the legend.

Abundance in Group 1: decreased abundance in underdeveloped cities vs developed cities

NCBI	Quality Control	Links
Clostridiaceae
Gammaproteobacteria
Peptostreptococcaceae
Prevotella
Ruminococcus

Revision editor(s): Kaluifeanyi101