Factors Associated With the Microbiome in Moderate-Late Preterm Babies: A Cohort Study From the DIAMOND Randomized Controlled Trial/Experiment 1
From BugSigDB
Needs review
Curated date: 2022/07/20
Curator: Uyokeeswaran
Revision editor(s): WikiWorks, Lwaldron, Uyokeeswaran, Tolulopeo, Hodan Issah, Scholastica
Subjects
- Location of subjects
- New Zealand
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Spontaneous preterm birth Spontaneous preterm birth,spontaneous preterm birth
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Day-10 (D10) (chronological age)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- 4-months corrected age (4M)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Faecal samples collected from moderate–late preterm (MLPT) babies enrolled in a randomized controlled trial of nutritional management at 4-months corrected age (4M).
- Group 0 sample size Number of subjects in the control (unexposed) group
- 207
- Group 1 sample size Number of subjects in the case (exposed) group
- 118
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- None
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- MaAsLin2
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
Signature 1
Needs review
Source: Text (page 5)
Description: Significantly abundant taxa between the two time points; day-10 (D10) (chronological age) and at 4-months corrected age (4M).
Abundance in Group 1: increased abundance in 4-months corrected age (4M)
Revision editor(s): Scholastica
Signature 2
Needs review
Source: Text (page 5)
Description: Significantly abundant taxa between the two time points; day-10 (D10) (chronological age) and at 4-months corrected age (4M).
Abundance in Group 1: decreased abundance in 4-months corrected age (4M)
| NCBI | Quality Control | Links |
|---|---|---|
| Staphylococcaceae | ||
| Corynebacteriaceae | ||
| Pasteurellaceae |
Revision editor(s): Scholastica
