Microbial communities associated with honey bees in Brazil and in the United States/Experiment 1
Curated date: 2024/03/07
Curator: Adenike Oladimeji-Kasumu
Revision editor(s): Adenike Oladimeji-Kasumu
Subjects
- Location of subjects
- Brazil
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Not specified
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Intestinal mucosa Bowel mucosa,Bowel mucosa of organ,Bowel mucous membrane,Bowel organ mucosa,Intestine mucosa,Intestine mucosa of organ,Intestine mucous membrane,Intestine organ mucosa,Mucosa of bowel,Mucosa of intestine,Mucosa of organ of bowel,Mucosa of organ of intestine,Mucous membrane of bowel,Mucous membrane of intestine,Organ mucosa of bowel,Organ mucosa of intestine,Tunica mucosa intestini,Intestinal mucosa,intestinal mucosa
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Restricted to specific location localized,Restricted to specific location,restricted to specific location
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Brazilian hive microenvironment
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- North American hive microenvironments
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- North American samples were collected from four hives of honey bees
- Group 0 sample size Number of subjects in the control (unexposed) group
- 5
- Group 1 sample size Number of subjects in the case (exposed) group
- 4
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 2 weeks
Lab analysis
- Sequencing type
- ITS / ITS2
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- RT-qPCR
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- raw counts
- Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment
- physical activity
Signature 1
Curated date: 2024/03/07
Curator: Adenike Oladimeji-Kasumu
Revision editor(s): Adenike Oladimeji-Kasumu, Rahila
Source: Table 5
Description: Frequency of occurrence (fi) and density (ρ, in log CFU g−1 or CFU individual bee−1) of bacteria associated with honey bee substrates from the United States and Brazil
Abundance in Group 1: increased abundance in North American hive microenvironments
| NCBI | Quality Control | Links |
|---|---|---|
| Bacillus licheniformis | ||
| Bacillus sp. (in: firmicutes) | ||
| Priestia megaterium | ||
| Priestia aryabhattai |
Revision editor(s): Adenike Oladimeji-Kasumu, Rahila
Signature 2
Curated date: 2024/03/07
Curator: Adenike Oladimeji-Kasumu
Revision editor(s): Adenike Oladimeji-Kasumu
Source: Table 5
Description: Frequency of occurrence (fi) and density (ρ, in log CFU g−1 or CFU individual bee−1) of bacteria associated with honey bee substrates from the United States and Brazil
Abundance in Group 1: decreased abundance in North American hive microenvironments
| NCBI | Quality Control | Links |
|---|---|---|
| Bacillus subtilis | ||
| Lactobacillus sp. | ||
| Lysinibacillus fusiformis |
Revision editor(s): Adenike Oladimeji-Kasumu
