Dysbiosis of skin microbiome and gut microbiome in melanoma progression/Experiment 11

Reviewed Marked as Reviewed by Svetlana up on 2024-9-13

Curated date: 2024/04/10

Curator: Idiaru angela

Revision editor(s): Idiaru angela

Host species Species from which microbiome was sampled. Contact us to have more species added.: Sus scrofa domesticus

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Skin of body Entire integument,Entire skin,Integument,Integumental organ,Pelt,Skin,Skin organ,Skin of body,skin of body

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Cutaneous melanoma cutaneous (skin) melanoma,cutaneous melanoma,cutaneous melanoma (disease),malignant cutaneous melanoma,malignant ear melanoma,malignant lip melanoma,malignant lower limb melanoma,malignant melanoma (of skin), stage unspecified,malignant melanoma of ear and/or external auricular canal,malignant melanoma of skin,malignant melanoma of skin of lower limb,malignant melanoma of skin of trunk except scrotum,malignant melanoma of skin of upper limb,malignant melanoma of skin stage unspecified,malignant neck melanoma,malignant scalp melanoma,malignant trunk melanoma,malignant upper limb melanoma,melanoma (disease) of zone of skin,melanoma of skin,melanoma of the skin,skin melanoma,skin, melanoma,zone of skin melanoma,zone of skin melanoma (disease),Cutaneous melanoma

Group 0 name Corresponds to the control (unexposed) group for case-control studies: samples from white piglets

Group 1 name Corresponds to the case (exposed) group for case-control studies: samples from MeLiM piglets

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: samples from piglets gotten through Homogenous breeding of two Black MeLiM pigs.

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V4-V5

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Ion Torrent

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: relative abundances