Discuss Microbiota assembly, structure, and dynamics among Tsimane horticulturalists of the Bolivian Amazon

ASV names changed

The ASVs on Figure 5C are are labeled with their ASV number and colored by family. To find the corresponding taxa, the phyloseq table Sprockett_Tsimane_ps.rds and Sprockett_Tsimane_5.Rdm files from the supplementary information were used. This implied grouping some ASVs under a single taxa. These are the complete ASV signatures for the experiments. YokoC (talk) 04:44, 13 November 2024 (UTC)

Experiment 1

Signature 1

435 ASV_5510_Bacteroides_vulgatus, 438 ASV_5614_Bacteroides_faecichinchillae/faecis+2, 439 ASV_5620_Bacteroides_dorei/fragilis, 441 ASV_5639_Bacteroides_fragilis/ovatus, 443 ASV_5651_Bacteroides_fragilis/ovatus, 444 ASV_5697_Bacteroides_uniformis, 446 ASV_5716_Bacteroides, 452 ASV_5801_Muribaculaceae, 453 ASV_5805_Muribaculaceae

Signature 2

425 ASV_5418_Prevotellaceae_UCG-003

Experiment 2

Signature 1

ASV_12_Methanobrevibacter, ASV_5794_Muribaculaceae, ASV_3382_Romboutsia_ilealis/timonensis, ASV_3418_Mogibacterium, ASV_3415_Mogibacterium, ASV_1403_Christensenellaceae_R-7_group, ASV_1399_Christensenellaceae_R-7_group, ASV_1383_Christensenellaceae_R-7_group, ASV_1369_Christensenellaceae_R-7_group, ASV_1338_Christensenellaceae_R-7_group, ASV_1324_Christensenellaceae_R-7_group, ASV_1298_Christensenellaceae_R-7_group, ASV_327_Lachnospiraceae_NK3A20_group, ASV_2576_Ruminiclostridium_9, ASV_1595_Subdoligranulum, ASV_1590_Subdoligranulum, 2495 Ruminococcaceae is on the graph but not found on the table.
Signature 2
ASV_1026_Lachnospira, ASV_1062_Lachnospiraceae, ASV_1081_Coprococcus_3_comes, ASV_1083_Coprococcus_3, ASV_117_Roseburia, ASV_127_Roseburia, ASV_1633_Subdoligranulum, ASV_165_Butyrivibrio_crossotus, ASV_31_Lachnospiraceae, ASV_4083_Veillonella_atypica/dispar, ASV_4097_Dialister, ASV_4124_Allisonella_histaminiformans, ASV_4181_Anaerovibrio, ASV_4198_Phascolarctobacterium_succinatutens, ASV_4202_Phascolarctobacterium, ASV_5242_Prevotellaceae, ASV_5246_Prevotellaceae_NK3B31_group, ASV_5247_Prevotellaceae_NK3B31_group, ASV_5266_Prevotellaceae, ASV_5268_Prevotella_2, ASV_5269_Prevotellaceae, ASV_5271_Prevotella_2, ASV_5273_Prevotella_2, ASV_5278_Prevotella_2, ASV_5283_Prevotella_2, ASV_53_Lachnospiraceae_NK4A136_group, ASV_5343_Prevotella_7, ASV_5346_Prevotella_7, ASV_5359_Prevotella_9_copri, ASV_5371_Prevotella_9, ASV_5394_Prevotella_9, ASV_5395_Prevotella_9, ASV_5397_Prevotella_9, ASV_5399_Prevotella_9, ASV_61_Lachnospiraceae_AC2044_group, ASV_6291_Ruminococcaceae_UCG-010, ASV_66_Lachnospiraceae, ASV_70_Lachnospiraceae_NK4A136_group, ASV_987_Dorea_longicatena,