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BugSigDB

A Comprehensive Database of Published Microbial Signatures

BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Slack team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.

About this project

Study by nameFeatured Studies
The role of the vaginal microbiome in distinguishing female chronic pelvic pain caused by endometriosis/adenomyosis
Annals of translational medicine, 2021 | Posterior fornix of vagina | Endometriosis | China
Fecal microbiome signatures of pancreatic cancer patients
Scientific reports, 2019 | Feces | Pancreatic carcinoma | Israel

Taxa

Fuzzy | Parameterized | Logical operators » ExampleAdvanced Search
Statistics
  • 1493 studies
  • 8637 signatures
  • 2195 unique taxa
  • 47 host species
  • 94 locations
  • 173 body sites
  • 518 conditions
  • contributed by 178 contributors
Top 5 Contributors in the last 30 days

Last 30 days (Top 5)