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BugSigDB
A Comprehensive Database of Published Microbial Signatures
BugSigDB.org (published in Nature Biotechnology) is a community-editable Semantic Mediawiki knowledge management system. Its primary functions include 1. standardization of key elements of published microbiome studies using ontologies and the NCBI taxonomy, 2. searchability, 3. Enrichment Analysis using bulk exports, GMT files, or other software (e.g. bugsigdbr), and 4. community interaction: you can request an account, contribute or analyze, learn about the project, report issues, and ask questions on the #bugsigdb channel of the community-bioc Zulip team. This collaborative effort aims to accelerate microbiome research by providing a comprehensive database of microbial signatures from published studies, along with relevant information on study design and geography, health outcomes, host body site, and experimental methods.
2006847Featured Taxon- BugSigDB Statistics
- Number of studies: 16 (filter)
- Number of signatures: 33
- Number of direct descendants: 0
Cancer, 2020 | Feces | Leukemia | United States of America
Frontiers in cellular and infection microbiology, 2022 | Anterior fornix of vagina, Lateral fornix of vagina, Uterine cervix | Preterm premature rupture of the membranes | China
- 1514 studies
- 8716 signatures
- 2195 unique taxa
- 47 host species
- 94 locations
- 173 body sites
- 518 conditions
- contributed by 178 contributors
Last 30 days (Top 5) |
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