The Effect of Psyllium Husk on Intestinal Microbiota in Constipated Patients and Healthy Controls/Experiment 3
From BugSigDB
Reviewed Marked as Reviewed by Folakunmi on 2025-3-26
Subjects
- Location of subjects
- United Kingdom
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Constipation Constipation,Costiveness,Dyschezia,constipation
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Healthy participants at Baseline
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Constipated participants at Baseline
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Differences in fecal microbiota of Healthy and Constipated participants at Baseline
- Group 0 sample size Number of subjects in the control (unexposed) group
- 8
- Group 1 sample size Number of subjects in the case (exposed) group
- 16
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 1 Month
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4-V5
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Mann-Whitney (Wilcoxon)
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.1
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Reviewed Marked as Reviewed by Folakunmi on 2025-3-26
Source: Table 2
Description: Taxonomic differences of fecal microbiota in Constipated patients and Healthy patients
Abundance in Group 1: increased abundance in Constipated participants at Baseline
| NCBI | Quality Control | Links |
|---|---|---|
| Actinomyces | ||
| Adlercreutzia | ||
| Christensenella sp. | ||
| Clostridia incertae sedis | ||
| Desulfovibrio | ||
| Erysipelotrichaceae incertae sedis | ||
| Rhodococcus | ||
| uncultured Coriobacterium sp. |
Revision editor(s): Ese
Signature 2
Reviewed Marked as Reviewed by Folakunmi on 2025-3-26
Source: Table 2
Description: Taxonomic differences of fecal microbiota in Constipated patients and Healthy patients
Abundance in Group 1: decreased abundance in Constipated participants at Baseline
| NCBI | Quality Control | Links |
|---|---|---|
| Lachnospira | ||
| SuterellaSuterella |
Revision editor(s): Ese
