| Pseudomonadota | | |
| Alcanivoracaceae | | |
| unclassified Actinomycetota | | |
| unclassified Micrococcales | | |
| unclassified Deltaproteobacteria | | |
| unclassified Acidaminococcaceae | | |
| unclassified Veillonellaceae | | |
| Pectobacteriaceae | | |
| Syntrophomonadaceae | | |
| Streptomycetaceae | | |
| Selenomonadaceae | | |
| Dermabacteraceae | | |
| unclassified Sphingobacteriia | | |
| Acidithiobacillaceae | | |
| Peptostreptococcaceae | | |
| Enterobacteriaceae | | |
| unclassified Negativicutes | | |
| Aerococcaceae | | |
| Staphylococcaceae | | |
| Atopobiaceae | | |
| Vibrionaceae | | |
| Alcanivorax | | |
| Aerococcus | | |
| Sutterella | | |
| Syntrophobotulus | | |
| Coprobacillus | | |
| unclassified Peptostreptococcaceae | | |
| Olsenella | | |
| Actinomycetota | | |
| unclassified Sutterellaceae | | |
| Negativicoccus | | |
| Lactococcus | | |
| Candidatus Syntrophonatronum | | |
| Angelakisella | | |
| Acidaminococcus | | |
| Pacaella | | |
| Selenomonas | | |
| unclassified Enterococcaceae | | |
| Holdemanella | | |
| Hespellia | | |
| Acidithiobacillus | | |
| Megasphaera | | |
| Bilophila | | |
| Escherichia | | |
| unclassified Enterobacteriaceae | | |
| unclassified Streptococcaceae | | |
| Vibrio | | |
| Prevotella disiens | | |
| Hallella colorans | | |
| Dialister micraerophilus | | |
| Peptostreptococcus anaerobius | | |
| Anaerococcus octavius | | |
| Parabacteroides johnsonii | | |
| Murdochiella asaccharolytica | | |
| Alterileibacterium massiliense | | |
| Alistipes senegalensis | | |
| Peptoniphilus sp. oral taxon 375 | | |
| Peptoniphilus sp. S276 | | |
| Megasphaera sp. DNF00912 | | |
| Bacteroides sp. DJF_B097 | | |
| Coprobacillus cateniformis | | |
| Holdemanella biformis | | |
| Anaerococcus obesiensis | | |
| Kallipyga massiliensis | | |
| Megasphaera sp. | | |
| Enterococcus faecium | | |
| Atopobium sp. | | |
| Hoylesella buccalis | | |
| Streptococcus thermophilus | | |
| Facklamia hominis | | |
| Enterococcus hirae | | |
| Prevotella sp. S8 F8 | | |
| Porphyromonas asaccharolytica | | |
| Escherichia sp. C71 | | |
| Ruminococcus sp. Marseille-P328 | | |
| Corynebacterium amycolatum | | |
| Shigella sonnei | | |
| Pantoea agglomerans | | |
| unclassified Facklamia | | |
| Syntrophobotulus glycolicus | | |
| Blautia sp. Marseille-P2398 | | |
| Staphylococcus hominis | | |
| Candidatus Syntrophonatronum acetioxidans | | |
| unclassified Angelakisella | | |
| Megasphaera massiliensis | | |
| Dialister succinatiphilus | | |
| Serratia marcescens | | |
| Acidaminococcus intestini | | |
| Dialister sp. S7D | | |
| Pacaella massiliensis | | |
| Candidatus Peptoniphilus massiliensis | | |
| unclassified Sutterella | | |
| Oscillibacter sp. Marseille-P3260 | | |
| Klebsiella oxytoca | | |
| Butyricimonas phoceensis | | |
| Alistipes sp. enrichment culture clone | | |
| Paraprevotella clara | | |
| Selenomonas ruminantium | | |
| Corynebacterium sp. IrT-R5M2-141 | | |
| Streptococcus anginosus | | |
| unclassified Escherichia | | |
| unclassified Enterobacter | | |
| Cronobacter sakazakii | | |
| Roseburia sp. | | |
| Eubacterium coprostanoligenes | | |
| Staphylococcus sp. | | |
