Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response
-
Quality control
- Retracted paper
- Contamination issues suspected
- Batch effect issues suspected
- Uncontrolled confounding suspected
- Results are suspect (various reasons)
- Tags applied
Experiment 1
Subjects
- Location of subjects
- United States of America
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Ovarian cancer cancer of ovary,cancer of the ovary,malignant neoplasm of ovary,malignant neoplasm of the ovary,malignant ovarian neoplasm,malignant ovarian tumor,malignant ovary neoplasm,malignant tumor of ovary,malignant tumor of the ovary,malignant tumour of ovary,ovarian cancer,ovarian cancer, epithelial,ovarian malignant tumor,ovarian neoplasm,ovary cancer,ovary neoplasm,primary ovarian cancer,tumor of the ovary,Ovarian cancer
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Benign
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Ovarian cancer
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Ovarian cancer refers to women with Ovarian cancer who are currently undergoing hysterectomy
- Group 0 sample size Number of subjects in the control (unexposed) group
- 30
- Group 1 sample size Number of subjects in the case (exposed) group
- 34
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- 2 weeks
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V5
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- centered log-ratio
- Statistical test
- Linear Regression
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.10
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
- Confounders controlled for Confounding factors that have been accounted for by stratification or model adjustment
- body mass index, menopause
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- increased
Signature 1
Source: Fig. 2M, Supplementary Table 1, Supplementary Table 3
Description: Differential abundance of taxa between Benign and Ovarian cancer patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium tuberculostearicum | ||
| Facklamia hominis | ||
| Mediterraneibacter faecis | ||
| [Ruminococcus] torques | ||
| Corynebacterium | ||
| Facklamia |
Revision editor(s): KateRasheed, WikiWorks
Experiment 2
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Fig. 2N, Supplementary Table 1, Supplementary Table 3
Description: Differential abundance of taxa between Benign and Ovarian cancer patients, gotten from the ovaries
Abundance in Group 1: decreased abundance in Ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Actinomycetota | ||
| Microbacterium lacus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 3
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Peritoneal fluid Peritoneal fluid,peritoneal fluid
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Fig. 2O, Supplementary Table 1, Supplementary Table 3
Description: Differential abundance of taxa between Benign and Ovarian cancer patients, gotten from Ascites/Peritoneal fluid
Abundance in Group 1: increased abundance in Ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Methylorubrum extorquens | ||
| Methylobacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 4
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Early Stage Ovarian Cancer (Early Stage OC)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Early Stage Ovarian Cancer (Early Stage OC) refers to patients at their early stage of ovarian cancer.
- Group 1 sample size Number of subjects in the case (exposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 4
Description: Differential abundance of taxa between Benign and Early Stage Ovarian cancer patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Early Stage Ovarian Cancer (Early Stage OC)
Revision editor(s): KateRasheed, WikiWorks
Experiment 5
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 4
Description: Differential abundance of taxa between Benign and Early Stage Ovarian cancer patients, gotten from urine
Abundance in Group 1: increased abundance in Early Stage Ovarian Cancer (Early Stage OC)
| NCBI | Quality Control | Links |
|---|---|---|
| Anaeroglobus | ||
| Anaeroglobus geminatus | ||
| Dialister | ||
| Dialister propionicifaciens |
Revision editor(s): KateRasheed, WikiWorks
Experiment 6
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Advanced Stage Ovarian Cancer
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Advanced Stage Ovarian Cancer refers to patients at the advanced stage of ovarian cancer.
- Group 1 sample size Number of subjects in the case (exposed) group
- 29
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- decreased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 5
Description: Differential abundance of taxa between Benign and Advanced Stage Ovarian cancer patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium | ||
| Corynebacterium tuberculostearicum |
Revision editor(s): KateRasheed, WikiWorks
Experiment 7
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Peritoneal fluid Peritoneal fluid,peritoneal fluid
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- decreased
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 5
Description: Differential abundance of taxa between Benign and Advanced Stage Ovarian cancer patients, gotten from Ascites/Peritoneal fluid
Abundance in Group 1: increased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Methylorubrum extorquens | ||
| Methylobacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 8
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Early Stage Ovarian cancer
- Group 0 sample size Number of subjects in the control (unexposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 6
Description: Differential abundance of taxa between Advanced and Early Stage Ovarian cancer patients, gotten from Ovaries
Abundance in Group 1: decreased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Microbacterium lacus | ||
| Actinomycetota |
Revision editor(s): KateRasheed, WikiWorks
Experiment 9
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- decreased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 6
Description: Differential abundance of taxa between Advanced and Early Stage Ovarian cancer patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: decreased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium sp. | ||
| uncultured Dialister sp. | ||
| Corynebacterium | ||
| Dialister |
Revision editor(s): KateRasheed, WikiWorks
Experiment 10
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 6
Description: Differential abundance of taxa between Advanced and Early Stage Ovarian cancer patients, gotten from urine.
Abundance in Group 1: decreased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Anaeroglobus geminatus | ||
| Dialister propionicifaciens | ||
| Hallella bergensis | ||
| uncultured Prevotella sp. | ||
| Prevotella | ||
| Prevotella 6Prevotella 6 | ||
| Dialister | ||
| Anaeroglobus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 11
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Uterus Uterus,uterus
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 6
Description: Differential abundance of taxa between Advanced and Early Stage Ovarian cancer patients, gotten from uterus
Abundance in Group 1: decreased abundance in Advanced Stage Ovarian Cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium | ||
| Corynebacterium tuberculostearicum | ||
| Roseateles | ||
| Roseateles depolymerans |
Revision editor(s): KateRasheed, WikiWorks
Experiment 12
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 6
Description: Differential abundance of taxa between Advanced and Early Stage Ovarian cancer patients, gotten from stool
Abundance in Group 1: decreased abundance in Advanced Stage Ovarian Cancer
Revision editor(s): KateRasheed, WikiWorks
Experiment 13
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Benign
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Low Grade Tumor
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Low Grade Tumor refers to patients with low-grade tumor
- Group 0 sample size Number of subjects in the control (unexposed) group
- 30
- Group 1 sample size Number of subjects in the case (exposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 7
Description: Differential abundance of taxa between Benign and Low grade tumor patients, gotten from ovaries
Abundance in Group 1: increased abundance in Low Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Achromobacter spanius | ||
| Achromobacter |
Revision editor(s): KateRasheed, WikiWorks
Experiment 14
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 7
Description: Differential abundance of taxa between Benign and Low grade tumor patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Low Grade Tumor
Revision editor(s): KateRasheed, WikiWorks
Experiment 15
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- High Grade Tumor
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- High Grade Tumor refers to patients with high-grade tumor
- Group 1 sample size Number of subjects in the case (exposed) group
- 29
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 8
Description: Differential abundance of taxa between Benign and High grade tumor patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in High Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Corynebacterium tuberculostearicum | ||
| Facklamia hominis | ||
| Corynebacterium | ||
| Facklamia |
Revision editor(s): KateRasheed, WikiWorks
Experiment 16
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 8
Description: Differential abundance of taxa between Benign and High-grade tumor patients, gotten from ovaries
Abundance in Group 1: decreased abundance in High Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Microbacterium lacus | ||
| Actinomycetota |
Revision editor(s): KateRasheed, WikiWorks
Experiment 17
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Peritoneal fluid Peritoneal fluid,peritoneal fluid
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 8
Description: Differential abundance of taxa between Benign and High grade tumor patients, gotten from Ascites/Peritoneal Fluid.
Abundance in Group 1: increased abundance in High Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Methylorubrum extorquens | ||
| Methylobacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 18
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Low Grade Tumor
- Group 0 sample size Number of subjects in the control (unexposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 9
Description: Differential abundance of taxa between Low and High grade tumor patients, gotten from ovaries.
Abundance in Group 1: decreased abundance in High Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Achromobacter spanius | ||
| Achromobacter |
Revision editor(s): KateRasheed, WikiWorks
Experiment 19
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Uterus Uterus,uterus
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 9
Description: Differential abundance of taxa between Low and High grade tumor patients, gotten from uterus.
Abundance in Group 1: decreased abundance in High Grade Tumor
| NCBI | Quality Control | Links |
|---|---|---|
| Roseateles depolymerans | ||
| Roseateles |
Revision editor(s): KateRasheed, WikiWorks
Experiment 20
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 9
Description: Differential abundance of taxa between Low and High grade tumor patients, gotten from urine.
Abundance in Group 1: decreased abundance in High Grade Tumor
Revision editor(s): KateRasheed, WikiWorks
Experiment 21
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 9
Description: Differential abundance of taxa between Low and High grade tumor patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: decreased abundance in High Grade Tumor
Revision editor(s): KateRasheed, WikiWorks
Experiment 22
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Benign
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Serous ovarian cancer
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Serous ovarian cancer is a type of ovarian cancer that forms in the tissue that lines the ovaries.
- Group 0 sample size Number of subjects in the control (unexposed) group
- 30
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 10
Description: Differential abundance of taxa between Benign and Serous ovarian cancer patients, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Serous ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Anaerococcus senegalensis | ||
| Corynebacterium tuberculostearicum | ||
| Facklamia hominis | ||
| Anaerococcus | ||
| Facklamia | ||
| Corynebacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 23
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Ovary Animal ovary,Female gonad,Female organism genitalia gonad,Female organism genitalia gonada,Female organism reproductive system gonad,Female organism reproductive system gonada,Female reproductive system gonad,Female reproductive system gonada,Genitalia of female organism gonad,Genitalia of female organism gonada,Gonad of female organism genitalia,Gonad of female organism reproductive system,Gonad of female reproductive system,Gonad of genitalia of female organism,Gonad of reproductive system of female organism,Gonada of female organism genitalia,Gonada of female organism reproductive system,Gonada of female reproductive system,Gonada of genitalia of female organism,Gonada of reproductive system of female organism,Ovaries,Ovarium,Ovum-producing ovary,Reproductive system of female organism gonad,Reproductive system of female organism gonada,Ovary,ovary
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 10
Description: Differential abundance of taxa between Benign and Serous ovarian cancer patients, gotten from ovaries
Abundance in Group 1: decreased abundance in Serous ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Microbacterium lacus | ||
| Actinomycetota |
Revision editor(s): KateRasheed, WikiWorks
Experiment 24
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Peritoneal fluid Peritoneal fluid,peritoneal fluid
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 10
Description: Differential abundance of taxa between Benign and Serous ovarian cancer patients, gotten from Ascites/Peritoneal Fluid
Abundance in Group 1: increased abundance in Serous ovarian cancer
| NCBI | Quality Control | Links |
|---|---|---|
| Methylorubrum extorquens | ||
| Methylobacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 25
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Other histologies
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Other histologies refers to patients with mucinous, endometroid and clear cell.
- Group 1 sample size Number of subjects in the case (exposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 11
Description: Differential abundance of taxa between Benign and patients with other histologies, gotten from urine.
Abundance in Group 1: increased abundance in Other histologies
| NCBI | Quality Control | Links |
|---|---|---|
| Anaeroglobus geminatus | ||
| Dialister propionicifaciens | ||
| Dialister | ||
| Anaeroglobus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 26
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Fallopian tube Fallopian tubes,Female paramesonephric duct,Mammalian oviduct,Paramesonephric duct of female,Salpinges,Salpinx,Tuba uterina,Uterine tube (sensu Mammalia),Fallopian tube,fallopian tube
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 11
Description: Differential abundance of taxa between Benign and patients with other histologies, gotten from the fallopian tubes.
Abundance in Group 1: increased abundance in Other histologies
| NCBI | Quality Control | Links |
|---|---|---|
| Lactobacillus iners AB-1 | ||
| Lactobacillus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 27
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 11
Description: Differential abundance of taxa between Benign and patients with other histologies, gotten from Lower reproductive tract (vaginal and cervical samples)
Abundance in Group 1: increased abundance in Other histologies
Revision editor(s): KateRasheed, WikiWorks
Experiment 28
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Fallopian tube Fallopian tubes,Female paramesonephric duct,Mammalian oviduct,Paramesonephric duct of female,Salpinges,Salpinx,Tuba uterina,Uterine tube (sensu Mammalia),Fallopian tube,fallopian tube
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Serous ovarian cancer
- Group 0 sample size Number of subjects in the control (unexposed) group
- 29
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 12
Description: Differential abundance of taxa between Serous and patients with other histologies, gotten from fallopian tube
Abundance in Group 1: increased abundance in Other histologies
| NCBI | Quality Control | Links |
|---|---|---|
| Lactobacillus iners AB-1 | ||
| Lactobacillus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 29
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Omentum Omentum,omentum
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 12
Description: Differential abundance of taxa between Serous and patients with other histologies, gotten from omentum.
Abundance in Group 1: increased abundance in Other histologies
| NCBI | Quality Control | Links |
|---|---|---|
| Angelakisella massiliensis | ||
| Lachnospira eligens | ||
| uncultured Bacillota bacterium |
Revision editor(s): KateRasheed, WikiWorks
Experiment 30
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 12
Description: Differential abundance of taxa between Benign and patients with other histologies, gotten from urine.
Abundance in Group 1: increased abundance in Other histologies
Revision editor(s): KateRasheed, WikiWorks
Experiment 31
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Peritoneal fluid Peritoneal fluid,peritoneal fluid
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Treatment outcome measurement Treatment outcome measurement,treatment outcome measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Sensitive (chemotherapy sensitive OCs)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Other tumor responses (refractory/resistant)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Other tumor responses refers to other responses (refractory/resistant) to tumor treatment that was gotten from patients. Refractory means recurrence while receiving the chemotherapy or within four weeks of the last dose of therapy; while resistant means recurrence from 4 weeks to 6 months after the last dose of chemotherapy
- Group 0 sample size Number of subjects in the control (unexposed) group
- 21
- Group 1 sample size Number of subjects in the case (exposed) group
- 4
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 13
Description: Differential abundance of taxa between Sensitive and other tumor responses, gotten from Ascites/peritoneal fluid
Abundance in Group 1: increased abundance in Other tumor responses (refractory/resistant)
| NCBI | Quality Control | Links |
|---|---|---|
| Anaerococcus tetradius | ||
| Anaerococcus |
Revision editor(s): KateRasheed, WikiWorks
Experiment 32
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- No event - 2 years post-diagnosis
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Patient status (Alive) - 2 years post-diagnosis
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Patient status (Alive) refers to patients that are alive after two years of diagnosis
- Group 0 sample size Number of subjects in the control (unexposed) group
- 17
- Group 1 sample size Number of subjects in the case (exposed) group
- 11
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 14
Description: Differential abundance of taxa between no event vs alive, gotten from Ascites/peritoneal fluid
Abundance in Group 1: increased abundance in Patient status (Alive) - 2 years post-diagnosis
Revision editor(s): KateRasheed, WikiWorks
Experiment 33
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 14
Description: Differential abundance of taxa between no event vs alive, gotten from stool.
Abundance in Group 1: increased abundance in Patient status (Alive) - 2 years post-diagnosis
Revision editor(s): KateRasheed, WikiWorks
Experiment 34
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Urine Urine,urine
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Patient status (Dead) - 2 years post-diagnosis
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Patient status (Dead) refers to patients that are dead after two years of diagnosis
- Group 1 sample size Number of subjects in the case (exposed) group
- 5
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 15
Description: Differential abundance of taxa between no event vs dead, gotten from urine.
Abundance in Group 1: increased abundance in Patient status (Dead) - 2 years post-diagnosis
| NCBI | Quality Control | Links |
|---|---|---|
| Anaerococcus vaginalis | ||
| Schaalia radingae | ||
| Anaerococcus | ||
| Actinomyces |
Revision editor(s): KateRasheed, WikiWorks
Experiment 35
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 15
Description: Differential abundance of taxa between no event vs dead, gotten from stool.
Abundance in Group 1: increased abundance in Patient status (Dead) - 2 years post-diagnosis
Revision editor(s): KateRasheed, WikiWorks
Experiment 36
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Event - 2 years
- Group 0 sample size Number of subjects in the control (unexposed) group
- 11
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 16
Description: Differential abundance of taxa between event vs dead, gotten from stool after two years post-diagnosis.
Abundance in Group 1: decreased abundance in Patient status (Dead) - 2 years post-diagnosis
| NCBI | Quality Control | Links |
|---|---|---|
| Dialister invisus | ||
| Dialister |
Revision editor(s): KateRasheed, WikiWorks
Experiment 37
Subjects
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina , Uterine cervix Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina,Canalis cervicis uteri,Caudal segment of uterus,Cervical canal,Cervical canal of uterus,Cervix,Cervix of uterus,Cervix uteri,Neck of uterus,Uterine cervix,uterine cervix
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- No event - 4 years post-diagnosis
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Patient status (Alive) - 4 years post-diagnosis
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Patient status (Alive) refers to patients that are alive after four years of diagnosis
- Group 0 sample size Number of subjects in the control (unexposed) group
- 4
- Group 1 sample size Number of subjects in the case (exposed) group
- 6
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 17
Description: Differential abundance of taxa between no event vs alive after four years post-diagnosis, gotten from the Lower reproductive tract (vagina and cervix).
Abundance in Group 1: increased abundance in Patient status (Alive) - 4 years post-diagnosis
Revision editor(s): KateRasheed, WikiWorks
Experiment 38
Subjects
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Patient status (Dead) - 4 years post-diagnosis
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Patient status (Dead) refers to patients that are dead after four years of diagnosis
- Group 1 sample size Number of subjects in the case (exposed) group
- 11
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 18
Description: Differential abundance of taxa between no event vs dead after four years post-diagnosis, gotten from the Lower reproductive tract (vagina and cervix).
Abundance in Group 1: decreased abundance in Patient status (Dead) - 4 years post-diagnosis
| NCBI | Quality Control | Links |
|---|---|---|
| Hoylesella buccalis | ||
| Prevotella |
Revision editor(s): KateRasheed, WikiWorks
Experiment 39
Subjects
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Event - 4 years post-diagnosis
- Group 0 sample size Number of subjects in the control (unexposed) group
- 6
Lab analysis
Statistical Analysis
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- unchanged
- Inverse Simpson Modification of Simpsons index D as 1/D to obtain high values in datasets of high diversity and vice versa
- unchanged
- Richness Number of species
- unchanged
Signature 1
Source: Supplementary Table 1, Supplementary Table 19
Description: Differential abundance of taxa between event vs dead after four years post-diagnosis, gotten from the Lower reproductive tract (vagina and cervix).
Abundance in Group 1: decreased abundance in Patient status (Dead) - 4 years post-diagnosis
| NCBI | Quality Control | Links |
|---|---|---|
| Hoylesella buccalis | ||
| Prevotella |
Revision editor(s): KateRasheed, WikiWorks
Contents
- 1 Experiment 1
- 2 Experiment 2
- 3 Experiment 3
- 4 Experiment 4
- 5 Experiment 5
- 6 Experiment 6
- 7 Experiment 7
- 8 Experiment 8
- 9 Experiment 9
- 10 Experiment 10
- 11 Experiment 11
- 12 Experiment 12
- 13 Experiment 13
- 14 Experiment 14
- 15 Experiment 15
- 16 Experiment 16
- 17 Experiment 17
- 18 Experiment 18
- 19 Experiment 19
- 20 Experiment 20
- 21 Experiment 21
- 22 Experiment 22
- 23 Experiment 23
- 24 Experiment 24
- 25 Experiment 25
- 26 Experiment 26
- 27 Experiment 27
- 28 Experiment 28
- 29 Experiment 29
- 30 Experiment 30
- 31 Experiment 31
- 32 Experiment 32
- 33 Experiment 33
- 34 Experiment 34
- 35 Experiment 35
- 36 Experiment 36
- 37 Experiment 37
- 38 Experiment 38
- 39 Experiment 39
