Gut microbiota differences in stunted and normal-lenght children aged 36-45 months in East Nusa Tenggara, Indonesia/Experiment 6
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Subjects
- Location of subjects
- Indonesia
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Body height height,Body height,body height
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Low Height
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- High Height
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Children with high Height aged 36-45 months
- Group 0 sample size Number of subjects in the control (unexposed) group
- 100
- Group 1 sample size Number of subjects in the case (exposed) group
- 100
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V3-V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Spearman Correlation
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Source: Figure 6A. ,height
Description: Heatmap of the taxa at genus level that were different (q < 0.05) when correlated by Spearman correlation analysis to the Height. Blue: Positive correlation; red: Negative correlation.
Abundance in Group 1: increased abundance in High Height
Revision editor(s): An05hka
Signature 2
Source: Figure 6A. ,height
Description: Heatmap of the taxa at genus level that were different (q < 0.05) when correlated by Spearman correlation analysis to the Height. Positive correlation; red: Negative correlation
Abundance in Group 1: decreased abundance in High Height
Revision editor(s): An05hka
