Gut microbiota differences in stunted and normal-lenght children aged 36-45 months in East Nusa Tenggara, Indonesia/Experiment 6

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Reviewed Marked as Reviewed by KateRasheed on 2025-8-20

Curated date: 2025/03/12

Curator: An05hka

Revision editor(s): An05hka, Victoria

Subjects

Location of subjects

Indonesia

Host species Species from which microbiome was sampled. Contact us to have more species added.

Homo sapiens

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology

Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology

Body height height,Body height,body height

Group 0 name Corresponds to the control (unexposed) group for case-control studies

Low Height

Group 1 name Corresponds to the case (exposed) group for case-control studies

High Height

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group

Children with high body Height aged 36-45 months

Lab analysis

Sequencing type

16S

16S variable region One or more hypervariable region(s) of the bacterial 16S gene

V3-V4

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance

Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).

relative abundances

Statistical test

Spearman Correlation

Significance threshold p-value or FDR threshold used for differential abundance testing (if any)

0.05

MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?

Yes

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Reviewed Marked as Reviewed by KateRasheed on 2025-8-20

Curated date: 2025/03/12

Curator: An05hka

Revision editor(s): An05hka, Victoria

Source: Figure 6a

Description: Heatmap of the taxa at genus level that were different (q < 0.05) when correlated by Spearman correlation analysis to the Height. Blue: Positive correlation; red: Negative correlation.

Abundance in Group 1: increased abundance in High Height

NCBI	Quality Control	Links
Anaerobutyricum hallii
Blautia
Carnobacteriaceae
Dorea
Flavonifractor
Fusicatenibacter
Oscillospiraceae
Peptostreptococcaceae
Subdoligranulum
Thomasclavelia
Ruminiclostridium 5Ruminiclostridium 5
Ruminococcaceae UCG-004Ruminococcaceae UCG-004
Ruminococcaceae UCG-013Ruminococcaceae UCG-013
Family XIII AD3011 groupFamily XIII AD3011 group

Revision editor(s): An05hka, Victoria

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EditHistoryDelete

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Reviewed Marked as Reviewed by KateRasheed on 2025-8-20

Curated date: 2025/03/12

Curator: An05hka

Revision editor(s): An05hka, Victoria

Source: Figure 6a

Description: Heatmap of the taxa at genus level that were different (q < 0.05) when correlated by Spearman correlation analysis to the Height. Positive correlation; red: Negative correlation

Abundance in Group 1: decreased abundance in High Height

NCBI	Quality Control	Links
Dialister
Faecalibacterium
Lachnoclostridium
Succinivibrio
Veillonella
Prevotella 9Prevotella 9
Lachnospiraceae UCG-004Lachnospiraceae UCG-004

Revision editor(s): An05hka, Victoria