A legume-enriched diet improves metabolic health in prediabetes mediated through gut microbiome: a randomized controlled trial/Experiment 8

From BugSigDB


Reviewed Marked as Reviewed by KateRasheed on 2025-5-2

Curated date: 2025/05/02

Curator: Joiejoie

Revision editor(s): Joiejoie

Subjects

Location of subjects
Singapore
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Diet measurement Diet measurement,diet measurement
Group 0 name Corresponds to the control (unexposed) group for case-control studies
Day 0 - Red bean fibre undigested (RBU)
Group 1 name Corresponds to the case (exposed) group for case-control studies
Day 2 - Red bean fibre undigested (RBU)
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
This is the Day 2 time point within the Red bean fibre undigested (RBU) group.

Lab analysis

Sequencing type
WMS
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
relative abundances
Statistical test
Mann-Whitney (Wilcoxon)
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
No


Signature 1

Reviewed Marked as Reviewed by KateRasheed on 2025-5-2

Curated date: 2025/05/02

Curator: Joiejoie

Revision editor(s): Joiejoie

Source: Fig. S6

Description: Species that changed significantly in in vitro fermentation experiments

Abundance in Group 1: decreased abundance in Day 2 - Red bean fibre undigested (RBU)

NCBI Quality ControlLinks
Agathobacter rectalis

Revision editor(s): Joiejoie