Vaginal microbiota alterations under supraphysiological estradiol state during in vitro fertilization-embryo transfer (IVF-ET) and the association with reproductive outcomes
Experiment 1
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina Distal oviductal region,Distal portion of oviduct,Vaginae,Vagina,vagina
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Estradiol [H][C@]12CC[C@]3(C)C(O)CC[C@@]3([H])[C@]1([H])CCc1cc(O)ccc21,C18H24O2,estra-1,3,5(10)-triene-3,17-diol,InChI=1/C18H24O2/c1-18-9-8-14-13-5-3-12(19)10-11(13)2-4-15(14)16(18)6-7-17(18)20/h3,5,10,14-17,19-20H,2,4,6-9H2,1H3/t14-,15-,16+,17?,18+/m1/s1,InChIKey=VOXZDWNPVJITMN-WKUFJEKOBY,oestradiol,Estradiol,estradiol
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Control group
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Estradiol/Cycle Group
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Patients undergoing fresh embryo transfer divided into HE (> 11,000 pmol/L), ME (5,000–11,000 pmol/L), LE (< 5,000 pmol/L) based on trigger day E2 levels. Frozen-thawed transfer patients divided into NC or HRT protocols
- Group 1 sample size Number of subjects in the case (exposed) group
- 91
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- Patients who had used antibiotics, vaginal probiotics, or immunomodulatory medication during the embryo transfer cycle were excluded.
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- decreased
Signature 1
Source: Table
Description: Escherichia Shigella was identified as a biomarker for the HRT group in comparison of vaginal microbiota across different estradiol/cycle groups.
Abundance in Group 1: increased abundance in Estradiol/Cycle Group
NCBI | Quality Control | Links |
---|---|---|
Escherichia ShigellaEscherichia Shigella |
Revision editor(s): Kimbrene Kakande
Signature 2
Source: Table 2
Description: Prevotella was identified as a biomarker for the LE group in comparison of vaginal microbiota across different estradiol/cycle groups.
Abundance in Group 1: increased abundance in Estradiol/Cycle Group
NCBI | Quality Control | Links |
---|---|---|
Prevotella |
Revision editor(s): Kimbrene Kakande
Signature 3
Source: Table 2
Description: Akkermansia was identified as a biomarker for the HE group in comparison of vaginal microbiota across different estradiol/cycle groups.
Abundance in Group 1: increased abundance in Estradiol/Cycle Group
NCBI | Quality Control | Links |
---|---|---|
Akkermansia |
Revision editor(s): Kimbrene Kakande
Signature 4
Source: Table 2
Description: Lactobacillus_iners was identified as a biomarker for the HRT group in comparison of vaginal microbiota across different estradiol/cycle groups.
Abundance in Group 1: increased abundance in Estradiol/Cycle Group
NCBI | Quality Control | Links |
---|---|---|
Lactobacillus_inersLactobacillus_iners |
Revision editor(s): Kimbrene Kakande
Experiment 2
Subjects
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Vaginal microbiome measurement vaginal flora measurement,vaginal microbiota measurement,Vaginal microbiome measurement,vaginal microbiome measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Ongoing pregnancy(OP)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- Adverse
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- Not specified
- Group 0 sample size Number of subjects in the control (unexposed) group
- 70
- Group 1 sample size Number of subjects in the case (exposed) group
- 22
- Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
- Not specified
Lab analysis
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- Not specified