Changes in the vaginal microbiota across a gradient of urbanization/Experiment 11
From BugSigDB
Subjects
- Location of subjects
- Venezuela
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina Vagina,vagina,Distal oviductal region,Distal portion of oviduct,Vaginae
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Lifestyle measurement Lifestyle measurement,lifestyle measurement
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- Combination of Low and Medium Amerindian urbanization group
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- High Amerindian urbanization group
- Group 1 sample size Number of subjects in the case (exposed) group
- 27
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V1-V3
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- Fisher's Exact Test
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Source: Table S7
Description: Differential abundance taxa between Low, Medium and High Amerindian urbanization groups.
Abundance in Group 1: increased abundance in High Amerindian urbanization group
| NCBI | Quality Control | Links |
|---|---|---|
| Dialister micraerophilus | ||
| Parvimonas micra | ||
| Sneathia sanguinegens | ||
| Ureaplasma urealyticum |
Revision editor(s): Tosin
Signature 2
Source: Table S7
Description: Differential abundance taxa between Low, Medium and High Amerindian urbanization groups.
Abundance in Group 1: decreased abundance in High Amerindian urbanization group
| NCBI | Quality Control | Links |
|---|---|---|
| Lactobacillus iners |
Revision editor(s): Tosin
