Changes in social environment impact primate gut microbiota composition/Experiment 3

Needs review

Curated date: 2024/11/28

Curator: MyleeeA

Revision editor(s): MyleeeA

Host species Species from which microbiome was sampled. Contact us to have more species added.: Macaca fascicularis

Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology: Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces

Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology: Diet measurement Diet measurement,diet measurement

Group 0 name Corresponds to the control (unexposed) group for case-control studies: T1 Single (Effect of Diet)

Group 1 name Corresponds to the case (exposed) group for case-control studies: T2 Single (Effect of Diet)

Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group: Group with controlled diet (T2Single) during the Single Living phase.

16S variable region One or more hypervariable region(s) of the bacterial 16S gene: V3-V4

Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance: Illumina

Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).: relative abundances

Significance threshold p-value or FDR threshold used for differential abundance testing (if any): 0.05

MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?: Yes