Differences in Gut Microbiota Profiles between Autoimmune Pancreatitis and Chronic Pancreatitis/Experiment 1
From BugSigDB
Reviewed Marked as Reviewed by Claregrieve1 on 2022/09/1
Subjects
- Location of subjects
- Japan
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Chronic pancreatitis chronic pancreatitis,Chronic pancreatitis (disorder),chronic pancreatitis (disorder) [Ambiguous],CP - Chronic pancreatitis,Pancreatitis, Chronic,pancreatitis, chronic,Pancreatitis, recurrent,Recurrent pancreatitis,Recurrent pancreatitis (disorder),Relapsing pancreatitis,Relapsing pancreatitis (disorder),Chronic pancreatitis
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- chronic pancreatitis
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- autoimmune pancreatitis type 1
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- autoimmune pancreatitis type 1
- Group 0 sample size Number of subjects in the control (unexposed) group
- 8
- Group 1 sample size Number of subjects in the case (exposed) group
- 12
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4-V5
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- Fisher's Exact Test
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- No
Signature 1
Reviewed Marked as Reviewed by Claregrieve1 on 2022/09/1
Curated date: 2021/01/10
Curator: Rimsha Azhar
Revision editor(s): Claregrieve1, Atrayees, WikiWorks
Source: Figure 2, text
Description: Differential microbial abundance between patients with type 1 autoimmune pancreatitis (AIP) and chronic pancreatitis (CP)
Abundance in Group 1: decreased abundance in autoimmune pancreatitis type 1
| NCBI | Quality Control | Links |
|---|---|---|
| Bacteroides ovatus | ||
| Clostridium lacusfryxellense | ||
| Enterocloster lavalensis | ||
| Streptococcus australis | ||
| Streptococcus gordonii | ||
| Anaerotignum lactatifermentans |
Revision editor(s): Claregrieve1, Atrayees, WikiWorks
