Exposure to concentrated ambient PM2.5 alters the composition of gut microbiota in a murine model/Experiment 1
From BugSigDB
Reviewed Marked as Reviewed by Claregrieve1 on 2022/12/29
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Mus musculus
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Air pollution air pollution,Air pollution
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- mice exposed to PM 2.5 (CAP)
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- mice exposed to filtered air (FA)
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- male C57Bl/6 J mice exposed to PM2.5 (CAP)
- Group 0 sample size Number of subjects in the control (unexposed) group
- 10
- Group 1 sample size Number of subjects in the case (exposed) group
- 10
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- V4
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Data transformation Data transformation applied to microbial abundance measurements prior to differential abundance testing (if any).
- relative abundances
- Statistical test
- ANOVA
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Alpha Diversity
- Shannon Estimator of species richness and species evenness: more weight on species richness
- increased
- Chao1 Abundance-based estimator of species richness
- increased
- Simpson Estimator of species richness and species evenness: more weight on species evenness
- increased
- Richness Number of species
- unchanged
Signature 1
Reviewed Marked as Reviewed by Claregrieve1 on 2022/12/29
Source: Figure 4 & text
Description: The differential taxa between FA- and CAP-exposed mice
Abundance in Group 1: increased abundance in mice exposed to filtered air (FA)
| NCBI | Quality Control | Links |
|---|---|---|
| Marvinbryantia | ||
| Mycoplasma | ||
| Mycoplasmataceae | ||
| Mycoplasmatales | ||
| Rikenellaceae | ||
| Alistipes finegoldii | ||
| Metamycoplasma sualvi | ||
| Rikenella microfusus | ||
| Lachnospiraceae bacterium DW52 |
Revision editor(s): Claregrieve1, WikiWorks
Signature 2
Reviewed Marked as Reviewed by Claregrieve1 on 2022/12/29
Source: Figure 4 & text
Description: The differential taxa between FA- and CAP-exposed mice
Abundance in Group 1: decreased abundance in mice exposed to filtered air (FA)
Revision editor(s): Claregrieve1, WikiWorks
