Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli/Experiment 5

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Reviewed Marked as Reviewed by Folakunmi on 2024-1-29

Curated date: 2022/08/09

Curator: Claregrieve1

Revision editor(s): Claregrieve1, WikiWorks, Folakunmi

Subjects

Location of subjects
France
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Feces Cow dung,Cow pat,Droppings,Dung,Excrement,Excreta,Faeces,Fecal material,Fecal matter,Fewmet,Frass,Guano,Matières fécales@fr,Merde@fr,Ordure,Partie de la merde@fr,Piece of shit,Porción de mierda@es,Portion of dung,Portion of excrement,Portion of faeces,Portion of fecal material,Portion of fecal matter,Portion of feces,Portion of guano,Portion of scat,Portionem cacas,Scat,Spoor,Spraint,Stool,Teil der fäkalien@de,Feces,feces
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Obesity Adiposis,Adiposity,Obese,Obese (finding),obesity,Obesity (disorder),Obesity [Ambiguous],obesity disease,obesity disorder,Obesity NOS,Obesity, unspecified,Overweight and obesity,Obesity
Group 0 name Corresponds to the control (unexposed) group for case-control studies
anorexic, lean, and overweight subjects (species level)
Group 1 name Corresponds to the case (exposed) group for case-control studies
obese subjects (species level)
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
patients who were obese by BMI (BMI>30 kg m−2)
Group 0 sample size Number of subjects in the control (unexposed) group
111
Group 1 sample size Number of subjects in the case (exposed) group
108
Antibiotics exclusion Number of days without antibiotics usage (if applicable) and other antibiotics-related criteria used to exclude participants (if any)
6 months

Lab analysis

Sequencing type
WMS
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
RT-qPCR

Statistical Analysis

Statistical test
Chi-Square
Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
0.05
MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
Yes


Signature 1

Reviewed Marked as Reviewed by Folakunmi on 2024-1-29

Curated date: 2022/08/09

Curator: Claregrieve1

Revision editor(s): Claregrieve1, Folakunmi

Source: Supplementary Table 1

Description: Differential microbial abundance between the obese group and all the other groups at the species level

Abundance in Group 1: decreased abundance in obese subjects (species level)

NCBI Quality ControlLinks
Bifidobacterium animalis

Revision editor(s): Claregrieve1, Folakunmi