Association of high-risk human papillomavirus infection duration and cervical lesions with vaginal microbiota composition/Experiment 3
From BugSigDB
Reviewed Marked as Reviewed by Fatima on 2022/04/6
Subjects
- Location of subjects
- China
- Host species Species from which microbiome was sampled. Contact us to have more species added.
- Homo sapiens
- Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
- Vagina Vagina,vagina,Distal oviductal region,Distal portion of oviduct,Vaginae
- Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
- Cervical glandular intraepithelial neoplasia Cervical glandular intraepithelial neoplasia,cervical glandular intraepithelial neoplasia
- Group 0 name Corresponds to the control (unexposed) group for case-control studies
- HPV-
- Group 1 name Corresponds to the case (exposed) group for case-control studies
- transient HPV+ with LSIL
- Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
- high-risk HPV transient infection (HPV has regressed within 1 year) with low grade squamus intraepithelial lesion
- Group 0 sample size Number of subjects in the control (unexposed) group
- 31
Lab analysis
- Sequencing type
- 16S
- 16S variable region One or more hypervariable region(s) of the bacterial 16S gene
- Not specified
- Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
- Illumina
Statistical Analysis
- Statistical test
- ANOVA
- Significance threshold p-value or FDR threshold used for differential abundance testing (if any)
- 0.05
- MHT correction Have statistical tests be corrected for multiple hypothesis testing (MHT)?
- Yes
Signature 1
Reviewed Marked as Reviewed by Fatima on 2022/04/6
Source: Figure 3C
Description: Comparison of the microbiota between high-risk HPV transient infection with LSIL group and the non-infected HPV group
Abundance in Group 1: decreased abundance in transient HPV+ with LSIL
| NCBI | Quality Control | Links |
|---|---|---|
| Sneathia | ||
| Shuttleworthella | ||
| Veillonella | ||
| [Clostridium] innocuum | ||
| Megasphaera | ||
| Devosia | ||
| Lysobacteraceae | ||
| Gardnerella |
Revision editor(s): Cynthia Anderson
