Association of high-risk human papillomavirus infection duration and cervical lesions with vaginal microbiota composition/Experiment 8

From BugSigDB


Reviewed Marked as Reviewed by Fatima on 2022/04/6

Curated date: 2021/03/19

Curator: Cynthia Anderson

Revision editor(s): Cynthia Anderson, WikiWorks

Subjects

Location of subjects
China
Host species Species from which microbiome was sampled. Contact us to have more species added.
Homo sapiens
Body site Anatomical site where microbial samples were extracted from according to the Uber Anatomy Ontology
Vagina Vagina,vagina,Distal oviductal region,Distal portion of oviduct,Vaginae
Condition The experimental condition / phenotype studied according to the Experimental Factor Ontology
Cervical glandular intraepithelial neoplasia Cervical glandular intraepithelial neoplasia,cervical glandular intraepithelial neoplasia
Group 0 name Corresponds to the control (unexposed) group for case-control studies
HPV-
Group 1 name Corresponds to the case (exposed) group for case-control studies
transient HPV+ with LSIL
Group 1 definition Diagnostic criteria applied to define the specific condition / phenotype represented in the case (exposed) group
high-risk HPV transient infection with low grade squamus intraepithelial lesion

Lab analysis

Sequencing type
16S
16S variable region One or more hypervariable region(s) of the bacterial 16S gene
Not specified
Sequencing platform Manufacturer and experimental platform used for quantifying microbial abundance
Illumina

Statistical Analysis

Statistical test
LEfSe


Signature 1

Reviewed Marked as Reviewed by Fatima on 2022/04/6

Curated date: 2021/03/19

Curator: Cynthia Anderson

Revision editor(s): Cynthia Anderson

Source: Figure 4D

Description: Abundance analysis of the microbiota between high-risk HPV transient infection with LSIL group and the non-infected HPV group

Abundance in Group 1: decreased abundance in transient HPV+ with LSIL

NCBI Quality ControlLinks
Devosia riboflavina
Candidatus Saccharibacteria
Sneathia
Lactobacillus
Pseudomonas
Shuttleworthella
Leptotrichiaceae
Oscillospiraceae
Pseudomonadaceae

Revision editor(s): Cynthia Anderson