16S rRNA gene sequencing of rectal swab in patients affected by COVID-19/Experiment 1/Signature 1

From BugSigDB
Reviewed Marked as Reviewed by Fatima on 2022/05/25

Curated date: 2021/07/04

Curator: Claregrieve1

Revision editor(s): Claregrieve1

Source: Table S5, Table S8, Table S11

Description: Differential abundance of microbial taxa between controls and ICU-admitted COVID-19 patients

Abundance in Group 1: increased abundance in COVID-positive patients admitted to ICU (i-COVID-19)

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Dermabacteraceae
unclassified Micrococcales
Nocardiaceae
unclassified Alphaproteobacteria
unclassified Actinomycetota
Pseudonocardiaceae
Streptomycetaceae
unclassified Erysipelotrichales
Mycobacteriaceae
unclassified Hyphomicrobiales
Veillonellales
unclassified Erysipelotrichia
Rhodospirillaceae
Brevibacteriaceae
Staphylococcaceae
Micrococcaceae
Erysipelotrichaceae
unclassified Burkholderiales
Microbacteriaceae
Corynebacteriaceae
Aerococcaceae
unclassified Negativicutes
Paenibacillaceae
unclassified Bacilli
Bacillaceae
unclassified Enterococcaceae
Arthrobacter
Negativicoccus
unclassified Dermabacteraceae
Vagococcus
Slackia
Micrococcales
Micrococcus
Rhodococcus
Kocuria
unclassified Flavobacteriaceae
Streptomyces
unclassified Erysipelotrichaceae
Candidatus Phytoplasma
Mycobacterium
unclassified Sutterellaceae
Mogibacterium
Erysipelotrichia
Angelakisella
Howardella
Fonticella
Haemophilus
Ihubacter
Brevibacterium
Enterococcus
Corynebacterium
Facklamia
Burkholderiales
unclassified Mycobacteriales
Paenibacillus
Bacillus
Enterococcus faecium
Corynebacterium amycolatum
Anaerococcus octavius
Corynebacterium imitans
Facklamia hominis
Fusobacterium nucleatum
Enterococcus hirae
Enterococcus rivorum
Hoylesella buccalis
Candidatus Anaerococcus phoceensis
unclassified Vagococcus
Corynebacterium tuscaniense
Lactobacillus helveticus
Corynebacterium sp. IrT-R5M2-141
Peptoniphilus sp. S362
Slackia sp.
Micrococcus luteus
Anaerococcus provencensis
Corynebacterium sundsvallense
Corynebacterium afermentans
Prevotella sp. S4-8
Butyrivibrio crossotus
unclassified Angelakisella
unclassified Bifidobacteriaceae (miscellaneous)
Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Gorbachella
Hyphomicrobiales
Senegalimassilia anaerobia
Veillonella parvula
Howardella ureilytica
Enterococcus casseliflavus
Klebsiella oxytoca
unclassified Fonticella
unclassified Mogibacterium
Clostridium sp. TM-40
unclassified Parasutterella
Clostridium fusiformis
Enterococcus sp.
Corynebacterium sp.

Revision editor(s): Claregrieve1